Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2076
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.7  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 243 RYPIFYRWDHFLE 205
           R PIFYRW  +++
Sbjct: 395 RDPIFYRWHSYID 407


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 298 GGRQKWKTSFNNFPGKSISNVSNQHSPGWNDIG 396
           GG   ++T  N  PG S SN  +     W + G
Sbjct: 338 GGEDLFRTMANAAPGNSASNRHSAWQSHWLNKG 370


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 610 NGXPGYVSVGVFYHSSRXILAXRAT 536
           NG P Y+S  VF +++  I+   A+
Sbjct: 444 NGDPNYISPEVFPNTNNAIMTPPAS 468


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 610 NGXPGYVSVGVFYHSSRXILAXRAT 536
           NG P Y+S  VF +++  I+   A+
Sbjct: 392 NGDPNYISPEVFPNTNNAIMTPPAS 416


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/20 (25%), Positives = 14/20 (70%)
 Frame = -1

Query: 362 ETFEIDXPGKLLKEVFHFCR 303
           +++ +   G+ ++++ HFCR
Sbjct: 425 DSYNLAGMGETIEDLLHFCR 444


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,844
Number of Sequences: 336
Number of extensions: 3842
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)