Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2076
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.4  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   7.2  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   7.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   9.5  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   9.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 341  PGKLLKEVFHFCRPPPSHFRSVGMITIYGIRGLGTRFFI--AGTIFSNANMYISNALLKA 168
            P  L + VF+   PPP  + S   +T    R    R++I  +G +F +  +Y+S+ ++  
Sbjct: 1025 PSSLEENVFYIQHPPPKSYLS-WSVTFDPQR---RRYYINPSGCVFVSLGIYLSSLIVPL 1080

Query: 167  VCG 159
            + G
Sbjct: 1081 LTG 1083


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -1

Query: 542 GHPERFLTRXLNFFLGHFPVPGILKNIGIVKNDXQSFGSKKPNLGIGI---FPMSFQPGE 372
           G+    L   L+F L    V   +++I    ND   +G  +PNL +GI    P S   G 
Sbjct: 8   GNKRWILFGLLSFLLNCVLVSCSVEDIEKAANDSFLWGPYRPNLYVGIRPKIPDSLMTGL 67

Query: 371 CW 366
            W
Sbjct: 68  MW 69


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 418 GFLLPKLWXSFFTMPIFFKIPGT 486
           GFL   LW    T  IFF +P T
Sbjct: 178 GFLYVSLWSLILTPLIFFFVPST 200


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 FRMFPTNIHLVGMTSGKYLFQGSAFYSRSFGNHFS 454
           FR  P+N ++   + GK+L Q  + +   FGN  S
Sbjct: 140 FRFIPSNFNI---SFGKHLEQAKSLFKSKFGNSSS 171


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 274 PTERKWLG-GGRQKWKTSFNNFPGKSISN 357
           P E++W+      + K  F+NFPG S +N
Sbjct: 33  PIEQEWMNLKSISQMKDFFSNFPGNSKAN 61


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 130 VHKLCKTIH-FPQTALSKAFDMYMLAFEKMVPAIKNR 237
           +H + + +  FP   L+ AFD Y   F+   P I NR
Sbjct: 379 IHNVVQCLDDFPWLFLTTAFDCYTRIFDIRDPIIDNR 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,895
Number of Sequences: 5004
Number of extensions: 62359
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)