Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2076
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    30   1.8  
05_02_0066 - 6284265-6284600,6284671-6284773,6285262-6285380           29   3.2  
01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...    27   9.8  

>11_04_0305 -
           16162063-16162096,16162282-16164365,16165283-16165351,
           16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 262 FTEFGGSVPDFLSLGPFSRTPTCTYRMLYLK 170
           F  FG S+P+++ + P SRTP  + R L+LK
Sbjct: 842 FGYFGCSLPNWM-MSPISRTPLTSLRYLFLK 871


>05_02_0066 - 6284265-6284600,6284671-6284773,6285262-6285380
          Length = 185

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 237 PIFYRWDHFLERQHV 193
           P+ YRW +F+ER+HV
Sbjct: 29  PVCYRWMYFIEREHV 43


>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 1   GSFXAFSGLLFKNIFLLGVPFVHSKPVKSLRT*FNHGR 114
           G F A  G     + LLG+PF+ S PV+ +   FN GR
Sbjct: 203 GVFFALLGAAALQV-LLGMPFLLSHPVEYISRAFNLGR 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,666,846
Number of Sequences: 37544
Number of extensions: 403234
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)