Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2076
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55776-1|AAC47406.1| 1851|Drosophila melanogaster calcium channe...    29   7.2  
BT024337-1|ABC86399.1|  315|Drosophila melanogaster IP09831p pro...    29   7.2  
AE014134-2441|AAF53363.2|  284|Drosophila melanogaster CG16873-P...    29   7.2  

>U55776-1|AAC47406.1| 1851|Drosophila melanogaster calcium channel
            alpha-1 subunit protein.
          Length = 1851

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 395  GKYLFQGSAFYSRSFGNHFS-RCR-YFLKYRERENAREKNLXLW 520
            G  LF G  FY    G H S  C+  + KY E E   ++ L +W
Sbjct: 922  GVQLFNGKFFYCTDEGKHTSAECQGSYFKYEEDELLPKQELRVW 965


>BT024337-1|ABC86399.1|  315|Drosophila melanogaster IP09831p
           protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 395 PMSFQPGECWLETFEIDXPGKLLKEVFHFCRP 300
           P+  Q G+C+L+      PG  L E   FCRP
Sbjct: 181 PLGCQNGQCYLDGSCQCDPGYKLDETRRFCRP 212


>AE014134-2441|AAF53363.2|  284|Drosophila melanogaster CG16873-PA
           protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 395 PMSFQPGECWLETFEIDXPGKLLKEVFHFCRP 300
           P+  Q G+C+L+      PG  L E   FCRP
Sbjct: 181 PLGCQNGQCYLDGSCQCDPGYKLDETRRFCRP 212


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,817,064
Number of Sequences: 53049
Number of extensions: 671739
Number of successful extensions: 1434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)