Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2076
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006714-9|AAK29714.5|  430|Caenorhabditis elegans Patterned exp...    28   6.6  
Z70205-8|CAO78730.1|  270|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z69661-5|CAA93495.2|  346|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    27   8.7  

>U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical
           protein C18B2.4 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 542 PXGQYXPAGMIKYXN-GNIPGXAISPTXFKPVXXHQ 646
           P GQ+ P G ++Y N G  PG    P  + P   +Q
Sbjct: 209 PAGQFQPVGTVQYQNVGAYPGQPQQPGQYHPYPTNQ 244


>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical
           protein ZC434.5 protein.
          Length = 1149

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 479 RERENAREKNLXLWLKIFLGGPXG 550
           R R N  EKNL LW ++  G P G
Sbjct: 306 RNRSNTPEKNLQLWEEMKKGSPKG 329


>AC006714-9|AAK29714.5|  430|Caenorhabditis elegans Patterned
           expression site protein 4 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 172 LSKAFDMYMLAFEKMVPAIKNRVPSPRIP*XVIXPTER--KWLGGGRQKWK 318
           + KAF+M    FE+ +  + N VP P I   VI P  +    +G G  K K
Sbjct: 126 IGKAFNMVCNKFEEDMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIK 176


>Z70205-8|CAO78730.1|  270|Caenorhabditis elegans Hypothetical
           protein C11H1.4b protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -1

Query: 335 KLLKEVFHFCRPPPSHFRSVGM-----ITIYGIRGLGTRFFIAGTIFSNANMYISN 183
           KLL++V  + R  P  F SVG+     I ++G  G G +  +A    SN+N  + N
Sbjct: 12  KLLEQVIIWPRKYPQLFESVGVPVSKGILLHGPSGCG-KTLLANATISNSNFSVVN 66


>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical
           protein C11H1.4a protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -1

Query: 335 KLLKEVFHFCRPPPSHFRSVGM-----ITIYGIRGLGTRFFIAGTIFSNANMYISN 183
           KLL++V  + R  P  F SVG+     I ++G  G G +  +A    SN+N  + N
Sbjct: 738 KLLEQVIIWPRKYPQLFESVGVPVSKGILLHGPSGCG-KTLLANATISNSNFSVVN 792


>Z69661-5|CAA93495.2|  346|Caenorhabditis elegans Hypothetical
           protein F48F7.7 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -1

Query: 509 NFFLGHFPVPGILKNIGIVKNDXQSFGSKKPNLGIGIFPMSFQPGECWLETFEIDXPGK 333
           NF L H P+  + + +  VK+  Q F      + + I    + PGE    T +ID   K
Sbjct: 154 NFDLNHLPLGNVPRMMKDVKDIGQIFKKGIVTITVTIPKAGYAPGEYLPITIDIDNASK 212


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -1

Query: 335 KLLKEVFHFCRPPPSHFRSVGM-----ITIYGIRGLGTRFFIAGTIFSNANMYISN 183
           KLL++V  + R  P  F SVG+     I ++G  G G +  +A    SN+N  + N
Sbjct: 738 KLLEQVIIWPRKYPQLFESVGVPVSKGILLHGPSGCG-KTLLANATISNSNFSVVN 792


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,915,657
Number of Sequences: 27780
Number of extensions: 355562
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)