Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2076
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 288 FSFSWXDYXLRNSGARYPIFYRWDHF 211
           FS +  D  L  SG    I+Y W HF
Sbjct: 93  FSLAVSDLLLLISGLPPEIYYIWSHF 118


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 243 RYPIFYRWDHFLE 205
           R PIFYRW  F++
Sbjct: 397 RDPIFYRWHAFVD 409


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = +1

Query: 301  GRQKWKTSFNN---FPGKSISNVSNQHSPGWNDI 393
            G Q W  S       PG  I     QH+ GW  I
Sbjct: 904  GGQTWSNSQVQGVAVPGSGIVASGQQHAGGWQSI 937


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 570 IPAGXYWPNGPPRKI 526
           IPA  Y+ N PPR I
Sbjct: 338 IPAPVYYGNFPPRPI 352


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 5/20 (25%), Positives = 14/20 (70%)
 Frame = -1

Query: 362 ETFEIDXPGKLLKEVFHFCR 303
           +++ +   G+ ++++ HFCR
Sbjct: 445 DSYTVAGMGETIEDLLHFCR 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,122
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)