Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2076
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18460.1 68416.m02346 hypothetical protein similar to PGPS/D1...    28   4.7  
At2g38590.1 68415.m04740 F-box family protein contains Pfam prof...    28   4.7  
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    27   8.2  

>At3g18460.1 68416.m02346 hypothetical protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 184

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 13  AFSGLLFKNIFLLGVPFVHS 72
           A  GLL+  IF +GVPFV+S
Sbjct: 94  ATGGLLYGMIFFIGVPFVYS 113


>At2g38590.1 68415.m04740 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 424

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 446 HFSRCRYFLKYRERENAREKNLXLWLKIFLGGPXGQY 556
           H  R  Y L Y+++E+     L  ++  FLG P  QY
Sbjct: 153 HKDRFIYALGYKDKESRGSFQLLRFVDYFLGAPKNQY 189


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 320 VFHFCRPPPSHFRSVGMITIYGIRGL-GTRFFIAGT 216
           VF    PPPSH R VG +    +  L G ++ I GT
Sbjct: 274 VFSSFNPPPSHRRLVGDLIYLDVVTLEGNKYCITGT 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,498
Number of Sequences: 28952
Number of extensions: 327384
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)