Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2067
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    33   0.14 
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    32   0.33 
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.44 
At4g02710.1 68417.m00366 kinase interacting family protein simil...    31   0.77 
At5g17240.1 68418.m02020 SET domain-containing protein contains ...    29   2.4  
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    29   3.1  
At2g07240.1 68415.m00831 Ulp1 protease family protein contains P...    29   3.1  
At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai...    28   4.1  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    28   5.4  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    28   5.4  
At3g04810.2 68416.m00521 protein kinase, putative similar to LST...    28   5.4  
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    28   5.4  
At1g33670.1 68414.m04165 leucine-rich repeat family protein cont...    28   5.4  
At3g20860.1 68416.m02637 protein kinase family protein contains ...    27   7.2  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   7.2  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 45  DEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 221
           D  K  +K+H   CLA  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
 Frame = +3

Query: 78  ADCLAETKADE--QLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKV 251
           A+ +AET   E  +    LK  + +  N   +K   C+++ S+       F+K + L  +
Sbjct: 479 AEDIAETMDAEVVEAQKMLKLAEAQRMNTDSRKAIFCVIMSSEDYID--AFEKLLRL-DL 535

Query: 252 PNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHAL 383
           P  +D+  +  L++ CL  K  +   T      C H+K+ K  L
Sbjct: 536 PGKQDREIMRVLVECCLQEKAFNKFYTVLASKLCEHDKNHKFTL 579


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 381 ERASGLSRGSISRNSRLFGEGCCLCWPGKRQS 286
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 462 LDKHVRASYLTLMRYGTVGL-DYVFTRKERASGLSRGSISRNSRLFGEGCCL 310
           ++K  R+  + L+      L DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 760 IEKLKRSQTIVLLNESIKSLEDYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At5g17240.1 68418.m02020 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 491

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 162 LKKYALCMLI-KSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 338
           LKK  L + + +  LMT +    KD+ L+   N  + L   +++  CL  + +   ++ W
Sbjct: 57  LKKGELVLKVPRKALMTTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFW 116

Query: 339 NYVKCYH 359
            Y   +H
Sbjct: 117 -YPYLFH 122


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 72  HRADCLAETKADEQLVNKLKT-GDFKTENEPLKKYALCMLIKSQLMTKD-GKFKKDVALA 245
           H  D + E  +    + K++T GD+K EN  L +Y  C+L    +  +D G   K + LA
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVLEWCDVCVEDFGPLMKLLRLA 286

Query: 246 KVPN 257
              N
Sbjct: 287 DGEN 290


>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 928

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 320 AVAFVGQASVNQLLYFQFVFSIRHFSQS--DVLLEFSVLGHQLRFD 189
           +++ VG+AS++    F  +   +HFS    DVL++FS   H LR D
Sbjct: 691 SISIVGEASLSHKEIFDIIERKKHFSSKVMDVLIKFS--RHLLRTD 734


>At1g66130.1 68414.m07505 oxidoreductase N-terminal
           domain-containing protein similar to AX110P [Daucus
           carota] GI:285739; contains Pfam profile PF01408:
           Oxidoreductase family NAD-binding Rossmann fold
          Length = 364

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 225 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 338
           KK   L + P A+D  ++EK+++AC  N       T W
Sbjct: 95  KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIW 132


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 21  VVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 191
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296

Query: 192 KSQLMTKDGKFKK 230
            S    KDG  KK
Sbjct: 297 VSSFEEKDGFLKK 309


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 21  VVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 191
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421

Query: 192 KSQLMTKDGKFKK 230
            S    KDG  KK
Sbjct: 422 VSSFEEKDGFLKK 434


>At3g04810.2 68416.m00521 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 578

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 15  VCVVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 194
           VC+++      +  E +KK       E K  + LV  L   ++   N  L +   C  I 
Sbjct: 77  VCIIIGYCKGGDMAEAIKKTNGVHFTEEKLCKWLVQILLALEYLHANHILHRDVKCSNI- 135

Query: 195 SQLMTKDGKFK-KDVALAKVPNAED 266
              +TKD   +  D  LAKV  ++D
Sbjct: 136 --FLTKDQDIRLGDFGLAKVLTSDD 158


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 15  VCVVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 194
           VC+++      +  E +KK       E K  + LV  L   ++   N  L +   C  I 
Sbjct: 77  VCIIIGYCKGGDMAEAIKKTNGVHFTEEKLCKWLVQILLALEYLHANHILHRDVKCSNI- 135

Query: 195 SQLMTKDGKFK-KDVALAKVPNAED 266
              +TKD   +  D  LAKV  ++D
Sbjct: 136 --FLTKDQDIRLGDFGLAKVLTSDD 158


>At1g33670.1 68414.m04165 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to receptor kinase-like
           protein GB:AAB82755 GI:2586083 from [Oryza
           longistaminata] (Science 270 (5243), 1804-1806 (1995))
          Length = 455

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 257 IRHFSQSDVLLEFSVLGHQLRFD 189
           IR F+Q D ++EF   G++L+FD
Sbjct: 362 IRFFNQMDFMVEFHAPGNKLQFD 384


>At3g20860.1 68416.m02637 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 427

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 15  VCVVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 194
           VC+V +     +  + +KK R    +E K    +V  L   D+   N  L +   C  I 
Sbjct: 87  VCIVTSYCEGGDMTQMIKKSRGVFASEEKLCRWMVQLLLAIDYLHNNRVLHRDLKCSNI- 145

Query: 195 SQLMTKDGKFK-KDVALAKVPNAED 266
              +TK+ + +  D  LAK+   +D
Sbjct: 146 --FLTKENEVRLGDFGLAKLLGKDD 168


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 255 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 362
           ++  KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,229
Number of Sequences: 28952
Number of extensions: 241158
Number of successful extensions: 644
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)