Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2066
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 187 1e-48
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 152 4e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 152 4e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 151 5e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 151 5e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 95 6e-21
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 1e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 6e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 8e-05
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.2
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 4.2
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 5.6
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 7.3
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 7.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 9.7
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 187 bits (455), Expect = 1e-48
Identities = 95/122 (77%), Positives = 102/122 (83%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRL 119
Query: 517 YF 522
F
Sbjct: 120 IF 121
Score = 187 bits (455), Expect = 1e-48
Identities = 95/122 (77%), Positives = 102/122 (83%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRL 195
Query: 517 YF 522
F
Sbjct: 196 IF 197
Score = 187 bits (455), Expect = 1e-48
Identities = 95/122 (77%), Positives = 102/122 (83%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRL 271
Query: 517 YF 522
F
Sbjct: 272 IF 273
Score = 187 bits (455), Expect = 1e-48
Identities = 95/122 (77%), Positives = 102/122 (83%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRL 347
Query: 517 YF 522
F
Sbjct: 348 IF 349
Score = 152 bits (369), Expect = 3e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 337 IQKESTLHLVLRLRGGM 387
IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (368), Expect = 4e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGGM 387
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 385 MQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRXYF 522
MQIFVK K +L + + + N + IQDKEG PPDQQR F
Sbjct: 1 MQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (368), Expect = 4e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGGM 387
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 385 MQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRXYF 522
MQIFVK K +L + + + N + IQDKEG PPDQQR F
Sbjct: 1 MQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGG 384
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 385 MQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRXYF 522
MQIFVK K +L + + + N + IQDKEG PPDQQR F
Sbjct: 1 MQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGG 384
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 385 MQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRXYF 522
MQIFVK K +L + + + N + IQDKEG PPDQQR F
Sbjct: 1 MQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 95.1 bits (226), Expect = 6e-21
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 337 IQKESTLHLVLRLRGG 384
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 475 IQDKEGXPPDQQRXYF 522
+++KEG PP QQR +
Sbjct: 30 VEEKEGIPPSQQRLIY 45
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 184 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 357
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 6e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 333
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 334 NIQKE 348
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 337 IQKESTLHLVLRL 375
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = -2
Query: 150 LEDTIISLCQLYVEQL*AQNTIT 82
+EDT++S+C++ +E ++N +T
Sbjct: 50 IEDTVLSICEVTLENKASENALT 72
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 160 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 333
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 334 NIQKESTLHLVL 369
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 466 SHXPIVSEAXTSKGMVFSGQEVS 398
SH P++S +KG + G EV+
Sbjct: 655 SHAPLISRIIPNKGSIMGGYEVT 677
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 381 SXKTQYKMKCGFFLNV 334
S +TQYKM+C +NV
Sbjct: 298 SLETQYKMECAVLMNV 313
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 7.3
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 112 DIQLTKRNYCIF*IIMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 291
DIQL R++ + + + T + IT +V + E + +PP+ LIF
Sbjct: 377 DIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIF 436
Query: 292 A-GKQLEDGRTLSDY 333
K++ D TL+DY
Sbjct: 437 VETKRMAD--TLTDY 449
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 166 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 261
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,141
Number of Sequences: 5004
Number of extensions: 42079
Number of successful extensions: 137
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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