Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2066
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 2e-49
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 192 2e-49
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 173 1e-43
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 6e-39
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 131 3e-31
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 89 3e-18
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 61 7e-10
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 45 5e-05
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 40 0.001
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 39 0.002
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.017
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 34 0.088
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 33 0.15
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 32 0.36
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 30 1.1
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 30 1.4
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 29 2.5
SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 119
Query: 517 YF 522
F
Sbjct: 120 IF 121
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 195
Query: 517 YF 522
F
Sbjct: 196 IF 197
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 271
Query: 517 YF 522
F
Sbjct: 272 IF 273
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 347
Query: 517 YF 522
F
Sbjct: 348 IF 349
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 423
Query: 517 YF 522
F
Sbjct: 424 IF 425
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 441 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 499
Query: 517 YF 522
F
Sbjct: 500 IF 501
Score = 157 bits (381), Expect = 6e-39
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 337 IQKESTLHLVLRLRGG 384
IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 119
Query: 517 YF 522
F
Sbjct: 120 IF 121
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 195
Query: 517 YF 522
F
Sbjct: 196 IF 197
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 271
Query: 517 YF 522
F
Sbjct: 272 IF 273
Score = 192 bits (468), Expect = 2e-49
Identities = 98/122 (80%), Positives = 103/122 (84%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQIFVK K +L + + + N + IQDKEG PPDQQR
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 347
Query: 517 YF 522
F
Sbjct: 348 IF 349
Score = 157 bits (381), Expect = 6e-39
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 337 IQKESTLHLVLRLRGG 384
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 173 bits (420), Expect = 1e-43
Identities = 89/122 (72%), Positives = 97/122 (79%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
IQKESTLHLVLRLRGGMQI VK + + + + + IQ++EG PP QR
Sbjct: 61 IQKESTLHLVLRLRGGMQISVKA--HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRL 118
Query: 517 YF 522
+
Sbjct: 119 LY 120
Score = 81.8 bits (193), Expect = 3e-16
Identities = 41/71 (57%), Positives = 54/71 (76%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYN
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 337 IQKESTLHLVL 369
I++ S LHL L
Sbjct: 136 IKQGSILHLFL 146
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 157 bits (381), Expect = 6e-39
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 337 IQKESTLHLVLRLRGG 384
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 385 MQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRXYF 522
MQIFVK K +L + + + N + IQDKEG PPDQQR F
Sbjct: 1 MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 131 bits (317), Expect = 3e-31
Identities = 63/63 (100%), Positives = 63/63 (100%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 337 IQK 345
IQK
Sbjct: 139 IQK 141
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +1
Query: 373 LRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRXYF 522
L MQIFVK K +L + + + N + IQDKEG PPDQQR F
Sbjct: 75 LTSTMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIF 123
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 88.6 bits (210), Expect = 3e-18
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = +1
Query: 262 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 387
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 43
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 60.9 bits (141), Expect = 7e-10
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 163 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 339
I V TLTG+ I + + P TI VK I+ K G P DQQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 340 QKESTLHLVLRLRGG 384
+TLHL++RL GG
Sbjct: 133 FAGATLHLIVRLLGG 147
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPDQQRLIFAGKQLEDGRTLS 327
M I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L D L
Sbjct: 67 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 126
Query: 328 DYNIQKES 351
+YNI ++S
Sbjct: 127 EYNIDEKS 134
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDY 333
M++ V G TL+V +EN +A ++ + G+P + L G QL D +TL+ Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 334 NIQKESTLHLVLR-LRGGMQIFVKPP 408
++++ + +V R R + V PP
Sbjct: 61 SVKENDVILMVRRQARHAARNTVAPP 86
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 160 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
Q+F T TL +D + +K++I+ K GIP D QRL F K+L D TL+ N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 337 IQK 345
+++
Sbjct: 67 LKQ 69
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 258
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = +1
Query: 181 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 360
+G L++ + TIE ++ ++ DK G PP QR I K + +L + +E+
Sbjct: 44 SGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKV-RETGFT 102
Query: 361 LVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXN 462
L L G + + D + L K K + N
Sbjct: 103 AYLYLLSGRNVELTREDVETLKLQKQKTQPSATN 136
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 36.3 bits (80), Expect = 0.017
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +1
Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
MQ+ VKTL +T T V +EGIP ++QRLIF GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 33.9 bits (74), Expect = 0.088
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 166 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 345
FV G+ ITL P + ++ + G P + ++ K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 346 ESTLHLVLR 372
+TL + L+
Sbjct: 229 GATLQIELQ 237
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 259 GIPPDQQRLIFAGKQLEDGRTLSDYN 336
GIP ++QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/64 (25%), Positives = 35/64 (54%)
Frame = +1
Query: 163 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 342
+ ++T G T+ +E+ ++E++KA+ + + GIP + RL LED + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 343 KEST 354
+++T
Sbjct: 245 QKAT 248
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 220 TIENVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 363
T+ ++K + +K G+ RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 346 ESTLHLVLRLRGGM 387
ESTLHLVLRLRGG+
Sbjct: 14 ESTLHLVLRLRGGV 27
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 346 ESTLHLVLRLRGGM 387
ESTLHLVLRLRGG+
Sbjct: 14 ESTLHLVLRLRGGV 27
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 169 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 339
+ +L G I P +++A IP DQ L F + LEDGR Y +
Sbjct: 533 LNSLVGVLIRFREHPVAIAADIEAMFMQCRVIPTDQPSLRFLWRDLEDGRRPDVYQM 589
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +1
Query: 169 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR---TLSDYNI 339
V + G+T + P +I +K KI + +QRL++ +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 340 QKESTLHLVLRL 375
+T+ L++ L
Sbjct: 120 PPYATISLIVVL 131
>SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 27.9 bits (59), Expect = 5.8
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 160 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYN 336
+I V+ TGK+I + E I++ K+Q + + Q F G ++ + RTL+ +
Sbjct: 439 KILVRGKTGKSIVDDKEMDKEIDSFDRKVQIERSV----QETDFRGSKVSNNNRTLAGQD 494
Query: 337 IQKESTLHL-VLRLRGGMQIFVKPPDRKRPSLW 432
K HL V L + P R+R W
Sbjct: 495 TPKSLDDHLSVASLGQKLSPQSSPRSRRRKMSW 527
>SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 184 GKTITLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 312
G T E+E + +++E + I GIP D+Q L+ G + D
Sbjct: 10 GAMYTFEMEMAMESVETLMGSIASSTGIPVDKQVLLICGGEALD 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,772
Number of Sequences: 59808
Number of extensions: 317831
Number of successful extensions: 827
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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