Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2066
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    192   6e-51
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    25   1.6  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    25   2.2  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.6  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  192 bits (468), Expect = 6e-51
 Identities = 98/122 (80%), Positives = 103/122 (84%)
 Frame = +1

Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
           IQKESTLHLVLRLRGGMQIFVK    K  +L + +    + N +  IQDKEG PPDQQR 
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 119

Query: 517 YF 522
            F
Sbjct: 120 IF 121



 Score =  192 bits (468), Expect = 6e-51
 Identities = 98/122 (80%), Positives = 103/122 (84%)
 Frame = +1

Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 337 IQKESTLHLVLRLRGGMQIFVKPPDRKRPSLWKXKLRTQLXNXRXXIQDKEGXPPDQQRX 516
           IQKESTLHLVLRLRGGMQIFVK    K  +L + +    + N +  IQDKEG PPDQQR 
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRL 195

Query: 517 YF 522
            F
Sbjct: 196 IF 197



 Score =  157 bits (381), Expect = 2e-40
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 336
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 337 IQKESTLHLVLRLRGG 384
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 348  FFLNVVV*QGASVFQLLASKDETLLIRRNSF 256
            FF+  V+  G  VF  +A  DET + R N+F
Sbjct: 1320 FFIYAVI--GMQVFGKIAMDDETSIHRNNNF 1348


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 435 LPKGWSFPVRRFHEDLHASXKTQYKMKC 352
           LP   +FP R  HE  +AS   Q   KC
Sbjct: 433 LPVLKNFPTRFIHEPWNASESVQRAAKC 460


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 253 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 375
           K   P  Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,154
Number of Sequences: 2352
Number of extensions: 9965
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)