Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2066
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.17 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   6.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   6.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   6.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 214 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 324
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 435 LPKGWSFPVRRFHEDLHASXKTQYKMKC 352
           LP   +FP R  HE  +A    Q   KC
Sbjct: 450 LPVLKNFPTRYIHEPWNAPLNVQRAAKC 477


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +3

Query: 102 IIVRHTTDKAKLLYLLDHHANLCEDSNWQDHYI 200
           ++  HT+D+ K   +  ++ N    + ++D+YI
Sbjct: 118 LVPNHTSDQHKWFQMSINNTNNNNTNKYKDYYI 150


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 279 LLIRRNSFFVLDLRLHILNC 220
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +2

Query: 440 SFGHNWXMXGRXSKTKKEXLLINSGXIFC 526
           S  H W +  R    + E  +I  G ++C
Sbjct: 9   STSHGWQIRDRIGDNELEERIIYPGTLWC 37


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +2

Query: 440 SFGHNWXMXGRXSKTKKEXLLINSGXIFC 526
           S  H W +  R    + E  +I  G ++C
Sbjct: 14  STSHGWQIRDRIGDNELEERIIYPGTLWC 42


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 305 WKTDAPCQTTTFKKNPHFILYCVFXEACRSS*N 403
           WK   P Q       P F L   F + C S  N
Sbjct: 192 WKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTN 224


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 305 WKTDAPCQTTTFKKNPHFILYCVFXEACRSS*N 403
           WK   P Q       P F L   F + C S  N
Sbjct: 192 WKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTN 224


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +2

Query: 440 SFGHNWXMXGRXSKTKKEXLLINSGXIFC 526
           S  H W +  R    + E  +I  G ++C
Sbjct: 14  STSHGWQIRDRIGDNELEERIIYPGTLWC 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,376
Number of Sequences: 438
Number of extensions: 2740
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)