Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2065
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 80 2e-16
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 38 8e-04
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 36 0.005
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 0.91
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.8
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 2.8
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 3.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 3.7
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 3.7
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 4.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 4.8
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 6.4
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 6.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 6.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.4
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 8.5
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 8.5
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 80.2 bits (189), Expect = 2e-16
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Frame = +3
Query: 198 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 374
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 375 MHGETPYEIMFGPDICGPGTKKVHVIFSYK-------GKNHLIKKDIRCKDDVYTHLYTL 533
M Y IMFGPD CG +VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGV-NDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 534 IVKPDNT 554
IVKPD T
Sbjct: 207 IVKPDQT 213
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 38.3 bits (85), Expect = 8e-04
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Frame = +3
Query: 78 FEEKFPDD---SWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL-S 245
F E+F + +W S W K+ G + L S D+ GL T + + + L S
Sbjct: 33 FSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILIS 89
Query: 246 RKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDI 419
P + + P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 90 NLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKK 148
Query: 420 CGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVK 542
CG I SY GK HL + T +YTL+++
Sbjct: 149 CGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ 191
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 35.9 bits (79), Expect = 0.005
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -3
Query: 232 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 56
N SSE F S+S SL P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 55 DNASKLTTTSTT 20
+ S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 163 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 32
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.8
Identities = 33/137 (24%), Positives = 59/137 (43%)
Frame = -3
Query: 424 PQMSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLR 245
P S I S SP S SS S + S S + + + T+ + + + R
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSS---KSSSSFSSTVSSSSSTSSSTLTSSSSSSSR 392
Query: 244 ERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQ 65
+ + SS + SSS S + V+ F ++ S ++ SH SS + SS ++
Sbjct: 393 PASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN----STSSRSSSHSSSHSLSSLSSKP 448
Query: 64 FIEDNASKLTTTSTTAF 14
+ ++S L T+S+ +
Sbjct: 449 ILTASSSSLLTSSSHTY 465
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +3
Query: 327 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 494
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 495 R--CKDDVYTH 521
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 339 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 518
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 519 HLYTLIVKP 545
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 232 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 137
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 84 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 227
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -3
Query: 256 LNLRERA*NLASSEV----FKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESS 95
++LR RA L+ E+ + LS+ LK +++ FP SFP +Y + ++SS
Sbjct: 121 VDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSS 178
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 4.8
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = -3
Query: 364 SSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSG- 188
+SL S P S S + T ++ +PS + + A ++SS PLSSS
Sbjct: 12 TSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSF 71
Query: 187 -SLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTAFI 11
S + + +S S + L+ SS +S +++ ++S ++S+++ +
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLV 131
Query: 10 FDS 2
S
Sbjct: 132 ASS 134
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 81 EEKFPDDSWESNWVYS 128
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 126 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 34
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +3
Query: 210 KTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHG 383
KT Y +SRK P L + F K DC G L+V D L+ +G
Sbjct: 952 KTIPRDLLYEVSRKINPLHQASTRLAIAFPDKRLLQYDC--GKLQVLDRLLKDLVSNG 1007
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 168 AGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNE 272
A F S E KGL +SE Y+L P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 6.4
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 1/145 (0%)
Frame = -3
Query: 433 VPGPQMSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGL 254
+P S P+ S SP S SS S S S + ++ ++ +PS + +
Sbjct: 518 IPSTSSSTPSS-SIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576
Query: 253 NLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPNSF-PGCSLYTQLLSHESSGNFSSK 77
+ + + S +SSS + F + + + P+S S + +LS + S
Sbjct: 577 SSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLM 636
Query: 76 NTSQFIEDNASKLTTTSTTAFIFDS 2
+S I +S + ++S + S
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISS 661
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 153 KFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQ 293
K LT +S+ D G+ FY + P S +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 183 SDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKL 362
++ ED++GL SED + +A + F +S+ + L + +++ + L+ F+ +L
Sbjct: 236 NESEDEEGLSLSEDGKKFA-NIDFGDYSSSEEFLKEHLNILADEE-ESDAILLEAFNAEL 293
Query: 363 EQK 371
E K
Sbjct: 294 EGK 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,061
Number of Sequences: 5004
Number of extensions: 56570
Number of successful extensions: 194
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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