Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2065
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 201 4e-52
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 192 1e-49
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 192 2e-49
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 186 1e-47
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 99 2e-21
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 48 6e-06
06_03_1514 + 30696632-30696724,30696857-30697009,30697226-306973... 32 0.40
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 5.0
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 5.0
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 6.6
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 28 6.6
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 27 8.7
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803... 27 8.7
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 201 bits (490), Expect = 4e-52
Identities = 94/164 (57%), Positives = 121/164 (73%), Gaps = 2/164 (1%)
Frame = +3
Query: 69 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 242
+VFF+EKF +D WES WV SE E G++ T+GK+ DPED KG++TSED RFYA+
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRFYAI 87
Query: 243 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 422
S ++ FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDIC
Sbjct: 88 SAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDIC 147
Query: 423 GPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNT 554
G TKKVH IF+ KNHLIKKD+ C+ D +H+YTLI+ PD T
Sbjct: 148 GYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDAT 191
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 192 bits (469), Expect = 1e-49
Identities = 92/172 (53%), Positives = 118/172 (68%), Gaps = 12/172 (6%)
Frame = +3
Query: 69 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLK 212
+VFF+EKF DD WE WV SE G++ T+GK++ D +D G++
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQ 84
Query: 213 TSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETP 392
TSED RFYA+S K+ FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK GETP
Sbjct: 85 TSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETP 144
Query: 393 YEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPD 548
Y IMFGPDICG TKKVH I + GKNHLIKKD+ CK D TH+YTLI++PD
Sbjct: 145 YSIMFGPDICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTLIIRPD 196
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 192 bits (468), Expect = 2e-49
Identities = 86/162 (53%), Positives = 120/162 (74%), Gaps = 2/162 (1%)
Frame = +3
Query: 69 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 242
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR +A+
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAI 85
Query: 243 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 422
S K FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPDIC
Sbjct: 86 SAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDIC 145
Query: 423 GPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPD 548
G TKK+H+I SY+G+N+ IKKD++C+ D TH+YT I++PD
Sbjct: 146 GTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPD 187
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 186 bits (453), Expect = 1e-47
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Frame = +3
Query: 60 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 233
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82
Query: 234 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 413
+A+S KF FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGP
Sbjct: 83 FAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGP 142
Query: 414 DICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPD 548
DICG TKK+H+I SY+G+N+ IKKD++C+ D TH YT I++PD
Sbjct: 143 DICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPD 187
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 99.1 bits (236), Expect = 2e-21
Identities = 68/171 (39%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Frame = +3
Query: 69 DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 248
D F E F D+S+E WV S GK+ K K SD +D GL SE A+ YA+ +
Sbjct: 24 DPLFYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIK 77
Query: 249 KF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPD 416
+ +P + + +V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD
Sbjct: 78 ELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPD 137
Query: 417 ICGPGTKKVHVIFSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKPDN 551
CG T KVH I +K GK H +K D +H+YT I+KPDN
Sbjct: 138 KCG-STNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDN 187
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 48.0 bits (109), Expect = 6e-06
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 465 GKNHLIKKDIRCKDDVYTHLYTLIVKPD 548
G NHLIKKD+ C+ D TH+YTLI++PD
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPD 542
>06_03_1514 +
30696632-30696724,30696857-30697009,30697226-30697309,
30697451-30697569,30697769-30697870,30699071-30699190,
30699285-30699350,30699563-30699629,30699720-30699773,
30700379-30700534,30701130-30701228
Length = 370
Score = 31.9 bits (69), Expect = 0.40
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Frame = -2
Query: 539 HNQSVQMCVDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWS-LSVHVLLL 363
HN + M V I ++ D M + ++Y +L NV HNL WS ++H+L
Sbjct: 88 HNALLAMAVGISQMQNV--DIMARKFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHILAR 145
Query: 362 Q-----FAVKDLEVSASTV-NVLFMFDSELDYQGF-------TLITERFELTGESIEP 228
FA + L + +F++D +L F +++E E+T +++P
Sbjct: 146 NQTKWWFAKRFLHPDVVAIYGFIFLWDEDLGVDNFDPRRYLDIMVSEGLEITQPALDP 203
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 418 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 275
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 325 QSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPN 146
+S+ L+ N + G+P L GLN +++++ + P+ SSG L FP + N
Sbjct: 738 KSIGALDLSNNQLSGGIPPGLGGLNFLADF-DVSNNNLTGPIPSSGQLTTFPPSRYDNNN 796
Query: 145 SFPGCSL 125
G L
Sbjct: 797 GLCGIPL 803
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 103 ESSGNFSSKNTSQFIEDNASKLTTTSTTA 17
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Frame = -2
Query: 437 LGSRTTNVRAEHNLIWSLSVHVL---LLQFAVKDLEV--SASTVNVLFMFDSEL-DY-QG 279
LGS T N+ A+H+ S H+ L +FAV E+ S N L +++++ D+ G
Sbjct: 701 LGSSTANLSADHDTSNLSSPHIAASSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNG 760
Query: 278 FTLITERFELTGES 237
+I ++F +GE+
Sbjct: 761 AQVIFDQFLSSGEA 774
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 150 GKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPF--SNEGKPLVVQFTVKHEQDI 320
G+ + A DPE D+ LK EDA AL++K + N K ++ ++++QD+
Sbjct: 244 GRVRDWARTHSGDPEIDEALKKGEDAGL-ALAKKVYAYIHKNGYKTKLMAAAIRNKQDV 301
>03_02_0389 -
8036575-8036841,8037011-8037133,8037516-8037736,
8037788-8037812,8038344-8038445,8038556-8038951,
8039647-8039699,8039813-8039897,8040220-8040370,
8040457-8040464
Length = 476
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 162 LTAGKFFSDPEDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTV 302
L AG + + GL S ARFYA+ R + S++ VQF+V
Sbjct: 12 LVAGGYLVLERPNAGLVLSTSARFYAIVRPLRDELSHDSWAWAVQFSV 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,917
Number of Sequences: 37544
Number of extensions: 369708
Number of successful extensions: 1004
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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