Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2065
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   220   5e-58
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   220   5e-58
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    83   2e-16
U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical p...    28   5.9  
U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.     27   7.7  
AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.    27   7.7  
AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.    27   7.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  220 bits (538), Expect = 5e-58
 Identities = 99/166 (59%), Positives = 127/166 (76%), Gaps = 1/166 (0%)
 Frame = +3

Query: 60  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 239
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 240 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 416
            + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPD
Sbjct: 72  RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131

Query: 417 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNT 554
           ICGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNT
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNT 176


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  220 bits (538), Expect = 5e-58
 Identities = 99/166 (59%), Positives = 127/166 (76%), Gaps = 1/166 (0%)
 Frame = +3

Query: 60  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 239
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 240 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 416
            + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPD
Sbjct: 72  RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131

Query: 417 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNT 554
           ICGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNT
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNT 176


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
 Frame = +3

Query: 192 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 362
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + 
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 363 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 512
           +  +   +T Y IMFGPD CG  T KVH+IF YK   +    +              DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 513 YTHLYTLIVKP 545
            THL+TL+VKP
Sbjct: 226 NTHLFTLVVKP 236


>U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical
           protein C07G1.7 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 347 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPR 225
           D E     + +L   D ++DY+ F  + E+F   G+S+  R
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSLWAR 170


>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 515 VDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIW 390
           +D+I A+D+FFD      + + +  LL      ++ EH  IW
Sbjct: 111 LDVIIASDVFFDPSTFCPLIDTFAQLL------IKFEHATIW 146


>AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -3

Query: 298 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 122
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302

Query: 121 TQLLSHESSGNFSSKNTSQFIE 56
           T + S +SS N +++  S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324


>AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -3

Query: 298 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 122
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399

Query: 121 TQLLSHESSGNFSSKNTSQFIE 56
           T + S +SS N +++  S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421


>AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -3

Query: 298 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 122
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523

Query: 121 TQLLSHESSGNFSSKNTSQFIE 56
           T + S +SS N +++  S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,371
Number of Sequences: 27780
Number of extensions: 330595
Number of successful extensions: 1062
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)