Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2064
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205...    29   4.2  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    27   9.8  

>01_01_0249 +
           2047793-2048561,2049861-2049896,2050068-2051012,
           2051215-2051264
          Length = 599

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 346 HRTSLHVSIASKISFALYCFDDSTTTIRS*YILLIVTNYT 227
           +R+SL ++     SF L+C  D   ++R   IL++  +YT
Sbjct: 47  NRSSLAIAACGHPSFELWCSRDGVASLRGSQILVLGIDYT 86


>03_01_0300 +
           2350232-2352274,2352349-2352669,2352752-2352838,
           2353031-2353708,2353800-2353964,2354139-2354433,
           2354581-2354795,2354885-2355190,2355269-2355332,
           2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 415 CIRYTVY-TFGMVFXSSLSWVSPLAXXLPAXPVSTSRVKL 531
           C+R T Y   G+V  ++LSW+SPL       P+  + + L
Sbjct: 225 CLRVTPYGDAGIVSLATLSWLSPLLSVGAQRPLELADIPL 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,234
Number of Sequences: 37544
Number of extensions: 203356
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)