Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2057
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0070 + 13045122-13045715                                         29   2.8  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     27   8.5  

>07_03_0070 + 13045122-13045715
          Length = 197

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 75  GRLMIGRPNRLSRSTNGGAEITERS 1
           G+++ G P RL +  NGG ++ +R+
Sbjct: 151 GKVVYGNPGRLGKKRNGGTKVKDRA 175


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 6/19 (31%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +3

Query: 165 HW---VFKKPFVKCCYICR 212
           HW   +++ P++ CC++C+
Sbjct: 248 HWNYLIYQSPYIVCCFVCK 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,163,417
Number of Sequences: 37544
Number of extensions: 129191
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)