Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2057
         (500 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   4.4  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   4.4  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    23   7.7  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 29  FVDRDNRFGRPIIRRP*NYTNCLVPF--SLLKTSTLL 133
           F+  D+R  R  +RR  ++T  ++PF  +L+K+S+ L
Sbjct: 860 FLTYDDRQLRMFVRRNGDWTGVVLPFPANLIKSSSSL 896


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 29  FVDRDNRFGRPIIRRP*NYTNCLVPF--SLLKTSTLL 133
           F+  D+R  R  +RR  ++T  ++PF  +L+K+S+ L
Sbjct: 861 FLTYDDRQLRMFVRRNGDWTGVVLPFPANLIKSSSSL 897


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 354 FPYGXYSQNLYYXLQ 310
           +P+  YS N YY +Q
Sbjct: 131 YPHSHYSHNQYYYMQ 145


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,102
Number of Sequences: 2352
Number of extensions: 5885
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)