Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2054
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    28   1.3  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   4.1  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   5.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.4  

>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 424 YGGPXXKLTSAGGGPNPER 480
           YG P   LTSAGG P+P R
Sbjct: 224 YGIPPIALTSAGGNPDPLR 242


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 245 ELPRHEPASGDDTWFLVLITXCIAVLGIAAFTGTLPAQM*KGSRXLQKWD 394
           E+  ++   G     L ++  CI V  IA+   +LPAQ+ +    L+ W+
Sbjct: 29  EVEGYQKEEGKFKLVLSILKQCIGVKDIASLRFSLPAQLLEPVGNLEYWN 78


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 345 VPVKAAMPSTAMQXVIKTRNHVSSP--LAGSCLGSSWYSTPGNMEWSSLFD 199
           VP+K    + ++   +  R H+  P      CLGS   + PG ME+  ++D
Sbjct: 70  VPLKQVY-ANSIGLPVYAREHLGLPNKYIALCLGSHAATIPGCMEYKMIYD 119


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 109  YXIWWWTQRQALCTAP 62
            + I+WW    ALC AP
Sbjct: 1533 HLIYWWVSIMALCVAP 1548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,882
Number of Sequences: 5004
Number of extensions: 36857
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)