Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2054
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362...    29   4.2  
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250...    28   5.6  

>04_01_0272 +
           3624910-3625247,3625286-3625853,3625920-3626895,
           3627053-3627087
          Length = 638

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 248 LPRHEPASGDDTWFLVLITXCIAVLGIAA 334
           +P   P+SG DTWFL L +     L +AA
Sbjct: 95  IPLRTPSSGSDTWFLSLCSGSHNSLRLAA 123


>05_01_0319 +
           2503963-2504176,2504316-2504376,2504691-2504769,
           2504861-2504940,2505046-2505140,2505748-2505847,
           2506647-2506716,2507657-2507758,2507972-2508053,
           2508257-2508304,2508841-2509009,2509089-2509314,
           2509961-2510131,2510200-2510438,2510600-2510684,
           2510778-2510876,2510954-2511153,2511232-2511307,
           2511463-2511675,2511763-2511815,2511999-2512151,
           2512474-2512606
          Length = 915

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 330 AMPSTAMQXVIKTRNHVSSPLAGSCLGSSWYSTPGNMEWSSLFD 199
           ++P T  + V+ T +HV  P  G C     Y+    ++W+  F+
Sbjct: 867 SLPVTRSKKVVMTVHHV--PSVGRCFAQRSYTRLSKLDWTGSFE 908


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,513,880
Number of Sequences: 37544
Number of extensions: 328412
Number of successful extensions: 789
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)