Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2046
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    83   4e-17
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.52 
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    27   2.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.8  
SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit Ym...    26   4.8  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   6.4  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   6.4  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   6.4  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 82.6 bits (195), Expect = 4e-17
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
 Frame = +3

Query: 93  LMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYI 269
           L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   G+ +AG +YI
Sbjct: 11  LLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYI 70

Query: 270 YLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 440
            +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +YL+  GY
Sbjct: 71  TIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 286 SVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 107
           +VPL   Y    + T   + S   SKP+    +S  + + P +  H++PS  ++A   ++
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546

Query: 106 L 104
           L
Sbjct: 547 L 547


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 576 IYRISKPNERVXLSLYRIYKMQLLISPWKKYYLIVLLDHGELRP 445
           I  I +P+E + L +  I KMQ   +   +    +LLDHG   P
Sbjct: 174 ILTIRRPDEPIDLHMVEIMKMQNRSASDTQLIRGLLLDHGARHP 217


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -3

Query: 253 AIVTPPLVSSDSFSKP--ATIFATSSFEISKPSDFAHTLPS*PAMAAFVTHLDAINCFVD 80
           AIVT   ++S S S P  + +F      I KP    HTL   P +     +   I  +V 
Sbjct: 548 AIVTLSRIASQSTSDPPPSFVFRDDQLVIDKPGFVYHTLNDIPQL-----NSSTIGSYVH 602

Query: 79  IILPAHFD*VQLKIK 35
              P +FD  Q+++K
Sbjct: 603 SHNPPYFD-YQIRLK 616


>SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit
           YmL33|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 97

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  AGKIMSTKQLMASRCVTKAAIAGHDGNVWAKSEGFEI 176
           AG+I   K+L++   V +   AG +    A S GF +
Sbjct: 44  AGRIFKVKELVSVSTVKQKLAAGQEKKSLASSSGFTV 80


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 570 RISKPNERVXLSLYRIYKMQLLISPWKKYYLIVLLDHGELRPFN 439
           ++S  N++    L ++ K+Q L    K   ++ L++H +L P N
Sbjct: 784 KVSATNKKALKVLLKVVKVQKLYGQEKWDEVLQLIEHLDLLPIN 827


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 451 KLAVI*EYYKIIFFPRGNK*LHFVYSIK 534
           K+++I E  K+ F P GNK  HF +S+K
Sbjct: 295 KVSLIQEGVKVDF-PEGNKFQHFFHSLK 321


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 145 MCGQSRKASKFQKMKWRR 198
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,429
Number of Sequences: 5004
Number of extensions: 50330
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)