Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2046
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 91 8e-19
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 91 8e-19
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 87 1e-17
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.019
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 31 0.93
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 29 2.2
03_02_0193 + 6312518-6312554,6312948-6313091,6313214-6313368,631... 28 5.0
07_01_0358 - 2631214-2632992 28 6.6
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 6.6
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 6.6
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206... 27 8.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 8.7
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 90.6 bits (215), Expect = 8e-19
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Frame = +3
Query: 111 VTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTD 287
+T AAI GHDG VWA+S F + +E+ I+ F+ L G+ + T+Y+ + G
Sbjct: 20 LTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFLAPTGLFLGPTKYMVIQGEP 79
Query: 288 H-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 437
+IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 80 GAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 90.6 bits (215), Expect = 8e-19
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Frame = +3
Query: 111 VTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTD 287
+T AAI GHDG VWA+S F + +E+ I+ F+ L G+ + T+Y+ + G
Sbjct: 20 LTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFLAPTGLFLGPTKYMVIQGEP 79
Query: 288 H-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 437
+IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 80 GAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 87.0 bits (206), Expect = 1e-17
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +3
Query: 111 VTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTD 287
+T AAI GHDG+VWA+S F + +E+ I+ F+ L G+ + GT+Y+ + G
Sbjct: 20 LTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEP 79
Query: 288 HI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 437
+ IR K G G+ KT ++++ +Y+EP+ P Q +VE+LG+YLI G
Sbjct: 80 GVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 156 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 248
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 30.7 bits (66), Expect = 0.93
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +2
Query: 221 ITANEWRRDDSGHAV-HLPQWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSA 388
+ A W + + ++ +W R Y P W+ GRRA D S+ T PT
Sbjct: 14 LRARNWSTEQATKSLKETVKWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIK 73
Query: 389 GRICRGEVRRIFNYL 433
GR+ E + F YL
Sbjct: 74 GRVSGKEQIKHFVYL 88
>02_05_0030 +
25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 353 HFSL*RT---HPTSAGRICRGEVRRIFNYLWLLKGRSSP 460
H +L RT HP AG E+ F+Y LL+G SSP
Sbjct: 857 HTNLLRTNAGHPVIAGFFLNDEIHETFSYNPLLRGYSSP 895
>03_02_0193 +
6312518-6312554,6312948-6313091,6313214-6313368,
6313596-6313871,6313957-6314081,6314234-6314351,
6314663-6314740,6318972-6319059,6319241-6319297,
6319398-6319405
Length = 361
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 81 STKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS 236
STK ++ V + + DG + A+S GF I+ DE +K+ + L+ S
Sbjct: 42 STKTILEGAKVVISLSSYVDGTLMARSSGFFINWDEESKVCTVLTSARLICS 93
>07_01_0358 - 2631214-2632992
Length = 592
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -1
Query: 570 RISKPNERVXLSLYRIYKMQLLISPWKKYYLIVL---LDHGELRPFNNHR*LNILLTSPR 400
R P L+ + ++ + L +P +Y + VL L HG L PF + L I SPR
Sbjct: 40 RAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGSPR 99
Query: 399 QMRPAEVGWVLHREK 355
V LHR +
Sbjct: 100 ----PRVALELHRRR 110
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 241 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 116
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 233 EWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTA 343
E RRD + +WH+ Y R+A QG A + + A
Sbjct: 684 ETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720
>05_01_0269 +
2062467-2062475,2063252-2063303,2063668-2063743,
2064156-2064288,2064400-2064578,2065228-2065495,
2066250-2066342,2066667-2066776,2066887-2066905,
2066985-2067170
Length = 374
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 307 SFARMIWSVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEIS 170
+F +I+ P + R+ ++ P LV S S S+P TIF+ S I+
Sbjct: 251 AFEGLIFGCPHLSICRIQPVMMP-LVQSCSLSQPPTIFSCLSLSIT 295
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 282 CH*GRCTACPLSSRR 238
CH G+C CPL RR
Sbjct: 324 CHAGKCGGCPLQGRR 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,022
Number of Sequences: 37544
Number of extensions: 345064
Number of successful extensions: 779
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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