Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2046
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39) 53 2e-07
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 32 0.31
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_21468| Best HMM Match : RVT_1 (HMM E-Value=1.2) 29 2.9
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 29 3.8
SB_25560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09) 28 6.6
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9) 27 8.8
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 27 8.8
>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 58.8 bits (136), Expect = 3e-09
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +3
Query: 111 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH 290
V +AAI G DG+ WA S GF +S+ E +++ ++ S+ TI G +Y+ L
Sbjct: 7 VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63
Query: 291 --IIRAKLGKVGVHCM-KTQQAVVISLYEEPI-QPQQAASVVEKLGEYLITCGY 440
I KL G C+ T+QA+VI YEE +VVE+L +YL GY
Sbjct: 64 SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117
>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
Length = 571
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +3
Query: 87 KQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS-GGVTIAGTR 263
+ L+ + V KA+I G +G +A S GF + E ++A + T GV + T+
Sbjct: 452 ESLLGTSQVAKASIHGLNGERYASSSGFVVLPSEAQVLIAAITKDPSPTYYKGVCLNRTK 511
Query: 264 YIYLS-GTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 440
Y + H + + G G + T Q ++I Y E + P ++V EKL +Y G+
Sbjct: 512 YFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571
>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
Length = 404
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +3
Query: 189 VAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE 368
++ +V F + + G+ Y + + K K G+ +KT ++++LY
Sbjct: 1 MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60
Query: 369 EPIQPQQAASVVEKLG 416
+ + P EKLG
Sbjct: 61 QEMSPSICVEASEKLG 76
>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 350 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHAAT 234
HSL C +A LA +R ++CAT P A RH+ T
Sbjct: 71 HSLECTIRCNAPLAVMR-HSLLCATRCHAPLAVMRHSRT 108
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 350 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHA 240
HSLLC +A LA +R ++CA P A RH+
Sbjct: 37 HSLLCATRCYAPLAVMR-HSLLCAIRCYAPLAVMRHS 72
>SB_21468| Best HMM Match : RVT_1 (HMM E-Value=1.2)
Length = 368
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 555 NERVXLSLYRIYKMQLLISPWKKYYLIVLLDHGELRPFNNHR*LNIL 415
+ERV L ++++ + + + WKK +I L G L+ N R + +L
Sbjct: 156 DERVHKLLVKVWRHKTIPNDWKKGLIIKLPKKGNLKECKNSRGITLL 202
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 135 HDGNVWAKSEGF-EISKDEVAKIV-AGFENESLLTSGGVTIAGTRYIYLSG 281
H G W ++G EI D + ++ GF L +GG + G Y L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430
>SB_25560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -1
Query: 528 RIYKMQLLISPWKKYYLIVLLDHGELRPFNNHR*LNIL 415
+I+K + + + WK+ YLI L G+L +N+R + +L
Sbjct: 405 KIWKEEEVPAEWKEGYLIKLPKKGDLSSCSNYRGITLL 442
>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
Length = 355
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 123 AIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 260
A+A G+ W+ G I K +++ + T+GGVTI GT
Sbjct: 185 ALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229
>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
Length = 430
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 245 DDSGHAVHLPQWHRPYHPREAWQ-GRR 322
DD+ A P W +P H + AW+ G+R
Sbjct: 256 DDTLRARRPPAWRQPVHAKSAWRTGKR 282
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -3
Query: 214 SKPATIFATSSFEISKPSD 158
S P IFA SSF I KPSD
Sbjct: 275 SPPLEIFAPSSFFIKKPSD 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,929,234
Number of Sequences: 59808
Number of extensions: 402863
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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