Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2046
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.       35   0.19 
AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens ...    35   0.19 
AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 1...    33   0.58 

>BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.
          Length = 336

 Score = 35.1 bits (77), Expect = 0.19
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 84  TKQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAG 257
           +KQ  AS  C++  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G
Sbjct: 164 SKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVG 222

Query: 258 TRYIYLSGT 284
                L GT
Sbjct: 223 LVSSLLGGT 231


>AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10936 fis, clone OVARC1000959, weakly similar to
           HYPOTHETICAL PROTEIN MJ0933. ).
          Length = 298

 Score = 35.1 bits (77), Expect = 0.19
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 84  TKQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAG 257
           +KQ  AS  C++  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G
Sbjct: 164 SKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVG 222

Query: 258 TRYIYLSGT 284
                L GT
Sbjct: 223 LVSSLLGGT 231


>AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 19
           variant protein.
          Length = 336

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +3

Query: 84  TKQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAG 257
           +KQ  AS  C++   A+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G
Sbjct: 164 SKQYSASWMCLSLLVALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVG 222

Query: 258 TRYIYLSGT 284
                L GT
Sbjct: 223 LVSSLLGGT 231


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,625,585
Number of Sequences: 237096
Number of extensions: 1781029
Number of successful extensions: 2974
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2974
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)