Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2046
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protei... 79 2e-15
AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3 pr... 79 2e-15
AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1 pr... 62 3e-10
AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical... 62 3e-10
U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protei... 60 2e-09
AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2 pr... 60 2e-09
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 28 4.4
>U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protein 3
protein.
Length = 126
Score = 79.0 bits (186), Expect = 2e-15
Identities = 42/116 (36%), Positives = 62/116 (53%)
Frame = +3
Query: 93 LMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIY 272
L+ S V+KAAI G DG VWAKS+ F IS +E F + L G+ + G +++
Sbjct: 11 LIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLV 70
Query: 273 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 440
L+ + I K G G KT QAV+IS+YE+ +QP+ + L +Y + Y
Sbjct: 71 LNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126
>AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3
protein.
Length = 126
Score = 79.0 bits (186), Expect = 2e-15
Identities = 42/116 (36%), Positives = 62/116 (53%)
Frame = +3
Query: 93 LMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIY 272
L+ S V+KAAI G DG VWAKS+ F IS +E F + L G+ + G +++
Sbjct: 11 LIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLV 70
Query: 273 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 440
L+ + I K G G KT QAV+IS+YE+ +QP+ + L +Y + Y
Sbjct: 71 LNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126
>AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1
protein.
Length = 132
Score = 62.1 bits (144), Expect = 3e-10
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Frame = +3
Query: 99 ASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTSGGVTIAGTRY 266
A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + + G I G Y
Sbjct: 14 AAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPAKGADIEGVHY 73
Query: 267 IYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKLGEYLITCGY 440
+ + +I K G +KT+ AV+I++YE P + Q VE + YL GY
Sbjct: 74 VVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESMQTYLNNAGY 132
>AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical
protein Y18D10A.20 protein.
Length = 132
Score = 62.1 bits (144), Expect = 3e-10
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Frame = +3
Query: 99 ASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTSGGVTIAGTRY 266
A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + + G I G Y
Sbjct: 14 AAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPAKGADIEGVHY 73
Query: 267 IYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKLGEYLITCGY 440
+ + +I K G +KT+ AV+I++YE P + Q VE + YL GY
Sbjct: 74 VVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESMQTYLNNAGY 132
>U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protein 2
protein.
Length = 131
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +3
Query: 102 SRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIY 272
S + +AAI G DG+VWA+S F ++ E+ + A F + + + G + YI
Sbjct: 15 SPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADLEEIHYIV 74
Query: 273 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 440
+ +I K + G KT QA+VI++YE + Q + VE + +YL + GY
Sbjct: 75 PRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131
>AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2
protein.
Length = 131
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +3
Query: 102 SRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIY 272
S + +AAI G DG+VWA+S F ++ E+ + A F + + + G + YI
Sbjct: 15 SPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADLEEIHYIV 74
Query: 273 LSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 440
+ +I K + G KT QA+VI++YE + Q + VE + +YL + GY
Sbjct: 75 PRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 510 LLISPWKKYYLIVLLDHGELRPFNNHR*LNILLTSPRQMRP 388
+ +SP+K I+LLD GE R F + +L PR P
Sbjct: 152 IALSPYKSSRNILLLDFGEARQFARNDNGKWMLRKPRDKAP 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,360
Number of Sequences: 27780
Number of extensions: 285726
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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