Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3E7R8 Cluster: Uncharacterized protein At4g08336.1; n=...    34   2.4  
UniRef50_A0BXK8 Cluster: Chromosome undetermined scaffold_134, w...    34   2.4  
UniRef50_Q6BUE0 Cluster: Similar to CA3767|CaNUP60 Candida albic...    34   2.4  
UniRef50_A0EH04 Cluster: Chromosome undetermined scaffold_96, wh...    32   9.8  
UniRef50_A0EDH7 Cluster: Chromosome undetermined scaffold_9, who...    32   9.8  

>UniRef50_Q3E7R8 Cluster: Uncharacterized protein At4g08336.1; n=4;
           Arabidopsis thaliana|Rep: Uncharacterized protein
           At4g08336.1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 157

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 352 MLRRSVYNVCRKEFACKLAGERRLRSPTGDF*ICTRSLINEI 477
           ++ +SV N CR  + C  A + RLR+    F +   +L+NEI
Sbjct: 36  LISKSVPNPCRTYYRCDFAAKNRLRNDDHTFKLVDEALLNEI 77


>UniRef50_A0BXK8 Cluster: Chromosome undetermined scaffold_134,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_134,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 571

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = -3

Query: 452 QI*KSPVGERSRRSPASLHANSLRHTLYTDRRNINSYDASTHKT------DIHNLFHLLL 291
           QI K+    R  ++  S+HA    H     R  IN+ D  + K        IHN+   L+
Sbjct: 488 QIYKAKDHVRPPQNYHSIHAVGRNHADPKTREKINNLDFESGKVIPNEELKIHNIESSLI 547

Query: 290 YDEYIRHDRSRPSSSCKINTKFIY 219
           Y+EY+ +D ++      I  KFI+
Sbjct: 548 YNEYVVYDVAQVQIHYLIKLKFIF 571


>UniRef50_Q6BUE0 Cluster: Similar to CA3767|CaNUP60 Candida albicans
           CaNUP60; n=1; Debaryomyces hansenii|Rep: Similar to
           CA3767|CaNUP60 Candida albicans CaNUP60 - Debaryomyces
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 499

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
 Frame = -3

Query: 443 KSPVGERSRRSPASLHANSLRHTL--YTDRRNINSYDASTHKTDIHNLFHLLLY-DEYIR 273
           KSP  +++   P S  ANSL + L   T   ++   DAS +KTDI   F    +  + ++
Sbjct: 259 KSPSAQKATSKPMSNAANSLLNILDGNTHSEDVEMKDASNNKTDIIEQFSNPYHRPQSVK 318

Query: 272 HDRSRPS--SSCKINTKFIYIKLKND-LTAEIIQK 177
             RS+ S  S   IN        KN  LTA+ I K
Sbjct: 319 KPRSQDSNKSQSSINASTPIKNKKNTLLTADDINK 353


>UniRef50_A0EH04 Cluster: Chromosome undetermined scaffold_96, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_96,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 432

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -3

Query: 413 SPASLHANSLRHTLYTDRRNINSYDASTHKTDIHNLFHLLLYDEYIRHDRSRPSSSCKIN 234
           S A+ H N L  ++ +  +N N     +H TDI N   + + D   +  R    S+ K N
Sbjct: 130 SDAAKHINELHESIQSLAQN-NKQIIDSHNTDIENPNSVDIIDSVTQQLRDNIRSNSKSN 188

Query: 233 TKFIYIKL 210
           +K I  KL
Sbjct: 189 SKIILKKL 196


>UniRef50_A0EDH7 Cluster: Chromosome undetermined scaffold_9, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_9, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2691

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -3

Query: 314  HNLFHLLLYDEYIRHDRSRPSSSCKINTKFIYIKLKNDLTAEIIQKLQY 168
            HN++H+L Y  YI   + +P + C    K+I  +++N L+  +  KL Y
Sbjct: 2635 HNVYHMLFYLIYI---KKKPITECNQLEKYIKDQMENKLSEFLPVKLTY 2680


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,860,357
Number of Sequences: 1657284
Number of extensions: 9982326
Number of successful extensions: 24393
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24388
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)