Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   7.0  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   7.0  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   7.0  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   7.0  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   7.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   7.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.2  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 376 VCRKEFACKLAGERRLRSPTGD 441
           +C +  +CK A +   R+ TG+
Sbjct: 139 ICHRVLSCKSALQMHYRTHTGE 160


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 504 GIVHGFTVGYFVNKTASTNLK 442
           G+ HG  +GY      S  LK
Sbjct: 420 GVCHGDDIGYLFKTKLSPELK 440


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 504 GIVHGFTVGYFVNKTASTNLK 442
           G+ HG  +GY      S  LK
Sbjct: 422 GVCHGDDIGYLFKTKLSPELK 442


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 504 GIVHGFTVGYFVNKTASTNLK 442
           G+ HG  +GY      S  LK
Sbjct: 420 GVCHGDDIGYLFKTKLSPELK 440


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 504 GIVHGFTVGYFVNKTASTNLK 442
           G+ HG  +GY      S  LK
Sbjct: 422 GVCHGDDIGYLFKTKLSPELK 442


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 100 QGGGVGITASGEA 62
           +GGG G  ASG A
Sbjct: 119 KGGGAGAAASGSA 131


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 246 RRARPATVVPDV 281
           R+ +P TVVP+V
Sbjct: 151 RKCKPKTVVPEV 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,374
Number of Sequences: 336
Number of extensions: 2690
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)