Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   3.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   3.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   5.5  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   7.2  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    25   7.2  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 189 NYTKITILKTVHYLIYTINASI 124
           +Y    IL++VHYLI TI+A++
Sbjct: 284 DYLPPNILQSVHYLISTISATL 305


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 190 KLYKNYNIKDCTLSNIYNKCQHRYVRERYIQG 95
           KLY N  +   T++ +Y +    Y+ +RY++G
Sbjct: 330 KLYNNDYMAIDTMTQLYCEVHQGYLADRYVEG 361


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -3

Query: 326 KTDIHNLFHLLLYDEYIRH----DRSRPSSSCKINTKFIYIKLKNDLTAEIIQKL 174
           KTD+  L  L     Y+      D S P    + + K +YI     L AE+++K+
Sbjct: 306 KTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKM 360


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 407 ASLHANSLRHTLYTDRRNINSYDASTHKTDIHNL-FHLLLYDEYIRHDRSRPSSSCKINT 231
           +S H+N     L+ D    N+++AST+ +   N   +     E  RHD S+ +   K  +
Sbjct: 731 SSRHSNGTSSMLFKDFTKHNNWEASTYPSAPKNTRTYPTAEVEKTRHDSSQSARQLKARS 790

Query: 230 KFIYIKLKNDLTAEI 186
               I +     +++
Sbjct: 791 TATTISISLSTVSDV 805


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 190  KLYKNYNIKDCTLSNIYNKCQHRYVRERYIQGGGVGI 80
            K++  YN+ DCTL  + +  Q     E  +   GV +
Sbjct: 915  KIWDRYNLPDCTLQELIDYFQKEEGLEVTMLSSGVSL 951


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 444 KIARWRAKPSLAGE 403
           K+ARWR K SL G+
Sbjct: 97  KVARWRGKSSLMGQ 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,700
Number of Sequences: 5004
Number of extensions: 42385
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)