BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-2042 (544 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 26 3.1 SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 26 3.1 SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 4.1 SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 5.5 SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 7.2 SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 25 7.2 >SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 441 Score = 26.2 bits (55), Expect = 3.1 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = -2 Query: 189 NYTKITILKTVHYLIYTINASI 124 +Y IL++VHYLI TI+A++ Sbjct: 284 DYLPPNILQSVHYLISTISATL 305 >SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 782 Score = 26.2 bits (55), Expect = 3.1 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -1 Query: 190 KLYKNYNIKDCTLSNIYNKCQHRYVRERYIQG 95 KLY N + T++ +Y + Y+ +RY++G Sbjct: 330 KLYNNDYMAIDTMTQLYCEVHQGYLADRYVEG 361 >SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1935 Score = 25.8 bits (54), Expect = 4.1 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = -3 Query: 326 KTDIHNLFHLLLYDEYIRH----DRSRPSSSCKINTKFIYIKLKNDLTAEIIQKL 174 KTD+ L L Y+ D S P + + K +YI L AE+++K+ Sbjct: 306 KTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKM 360 >SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual Length = 968 Score = 25.4 bits (53), Expect = 5.5 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = -3 Query: 407 ASLHANSLRHTLYTDRRNINSYDASTHKTDIHNL-FHLLLYDEYIRHDRSRPSSSCKINT 231 +S H+N L+ D N+++AST+ + N + E RHD S+ + K + Sbjct: 731 SSRHSNGTSSMLFKDFTKHNNWEASTYPSAPKNTRTYPTAEVEKTRHDSSQSARQLKARS 790 Query: 230 KFIYIKLKNDLTAEI 186 I + +++ Sbjct: 791 TATTISISLSTVSDV 805 >SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme |Schizosaccharomyces pombe|chr 2|||Manual Length = 1012 Score = 25.0 bits (52), Expect = 7.2 Identities = 11/37 (29%), Positives = 18/37 (48%) Frame = -1 Query: 190 KLYKNYNIKDCTLSNIYNKCQHRYVRERYIQGGGVGI 80 K++ YN+ DCTL + + Q E + GV + Sbjct: 915 KIWDRYNLPDCTLQELIDYFQKEEGLEVTMLSSGVSL 951 >SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 250 Score = 25.0 bits (52), Expect = 7.2 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 444 KIARWRAKPSLAGE 403 K+ARWR K SL G+ Sbjct: 97 KVARWRGKSSLMGQ 110 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,124,700 Number of Sequences: 5004 Number of extensions: 42385 Number of successful extensions: 100 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 223909422 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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