Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302...    30   1.4  
05_07_0162 + 28090579-28091343                                         30   1.4  
05_03_0509 + 14858250-14858545,14859139-14859243,14859345-14859912     27   9.7  
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023...    27   9.7  

>08_01_0343 -
           3025577-3025810,3026428-3026505,3026630-3026748,
           3027566-3027645,3028034-3028107,3028536-3028620,
           3028704-3028789,3028968-3029038,3029126-3029207,
           3029490-3029531,3029552-3029584,3029699-3029794,
           3030163-3030414,3030970-3031149,3032079-3032119,
           3032341-3032470,3032504-3032606,3032686-3032773,
           3033151-3033304,3033688-3033739,3033815-3033894,
           3034478-3034789,3034886-3034955,3035033-3035100,
           3035405-3035678,3036408-3036580,3037036-3037128,
           3037228-3037443
          Length = 1121

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 8   HTASSRCTASWLMITTCDRLA*RC-DADPTALYITLTHISMLAFI 139
           HT   R TASW +   C  +  R  D +P+A  +  + IS+L  I
Sbjct: 816 HTVKVRITASWALANLCSSIRFRALDTNPSAGVLDKSAISLLVEI 860


>05_07_0162 + 28090579-28091343
          Length = 254

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 3   ARIPPRAGAQPHGS*LQRVIASPDAVMPTPPP 98
           A +PP AG +  G  L  V   P +  PTPPP
Sbjct: 49  AEVPPLAGGRCVGPPLYPVFGRPRSPPPTPPP 80


>05_03_0509 + 14858250-14858545,14859139-14859243,14859345-14859912
          Length = 322

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 23  RCTASWLMITTCDRLA*RCDADPTALYIT 109
           RCT  +  + T  R   RCD DP +  +T
Sbjct: 138 RCTHKYDQLCTAQRQVQRCDDDPASYRVT 166


>02_05_1276 +
          35397948-35398298,35398937-35401738,35402085-35402306,
          35402503-35402562,35402615-35402698,35402740-35402816,
          35403147-35403363
          Length = 1270

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 12 PPRAGAQPHGS*LQRVIASPDAVMPTPPP 98
          PP+AG  P    L R    P +  P+PPP
Sbjct: 4  PPQAGPSPAVRVLSRTPPPPASSSPSPPP 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,867,832
Number of Sequences: 37544
Number of extensions: 280750
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)