Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)                   34   0.086
SB_14179| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)                 29   2.5  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_54728| Best HMM Match : Collagen (HMM E-Value=6.1)                  28   4.3  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        28   5.7  
SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)     27   7.5  
SB_59179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)                      27   9.9  
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)               27   9.9  

>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
          Length = 454

 Score = 33.9 bits (74), Expect = 0.086
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 425 RSRRSPASLHANSLRHTLYTDRRNINSYDAS-THKTDIHNLFHLLLYDEYIRHDRSR 258
           R+R    ++H ++L    YTD    + Y  + TH T+IH L      D + RH  +R
Sbjct: 273 RTRMHGTNIHGHALIPQTYTDTHARHKYTRTRTHGTNIHGLIPQTYTDTHARHKHTR 329


>SB_14179| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
          Length = 313

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 127 HRYVRERYIQGGGVGITASGEAITRCNHEP*GCAPARG 14
           HR  R+  ++GG V + A   A+  CN    G APARG
Sbjct: 258 HRECRQPRLEGGVVTLFAR-RAMRICNRNGTGAAPARG 294


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 380 HTLYTDRRNINSYDASTHKTDIHNL-FHLLLYDEYIRHD 267
           HT  T R + + YD  TH+T  H+   H +   E  RHD
Sbjct: 484 HTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHD 522


>SB_54728| Best HMM Match : Collagen (HMM E-Value=6.1)
          Length = 161

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 480 GYFVNKTASTNLKIAR-WRAKPSLAGELTCEFFATHIIHR 364
           GY   K  S  L+  R  RA P+L    TC++F +H +H+
Sbjct: 82  GYTSGKNRSLRLRSVRDQRALPNLT-VWTCQYFVSHSLHK 120


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 455 VQI*KSPVGERSRRSPASLHA-NSLRHTLYTDRRNINSYDASTHKT 321
           V I K+P+G  SRRSP+   A   +R  +   RR+ +  D+S +++
Sbjct: 743 VTITKAPMGRVSRRSPSPERALAEVREKIEVPRRSSHMEDSSANRS 788


>SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)
          Length = 935

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 25  VHSLMAHDYNV*SPRLTL*CRPHRPVYNAHAHIYAGIYCIY*IVYSL 165
           V+ +  H Y++   R TL    +R V  +H+H+++ +Y ++   YSL
Sbjct: 308 VYQVHTHTYSLPCTRFTLTLLLYR-VPGSHSHLFSTVYQVHTHTYSL 353



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 25  VHSLMAHDYNV*SPRLTL*CRPHRPVYNAHAHIYAGIYCIY*IVYSL 165
           V+ +  H Y++   R TL    +R V  +H+H+++ +Y ++   YSL
Sbjct: 273 VYQVHTHTYSLPCTRFTLTLILYR-VPGSHSHLFSTVYQVHTHTYSL 318


>SB_59179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -3

Query: 398 HANSLRHTLYTDRRNINSYDASTHKTDIHNLF-HLLLYDEYIRHDRSRPSSSCKINTKFI 222
           H   LRHT  T+ R +N YD   +      L+ HL  Y  +     S  +S     T FI
Sbjct: 11  HFVELRHTYLTENRQLNMYDYRENDGIEFALWSHLYHYHSWCEPRLSGNASRQSSKTSFI 70


>SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)
          Length = 334

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 377 TLYTDRRNINSYDASTHKTDIHNLFHLLLYDEYIRHD 267
           TL+ +R  ++S++    K      FH  +YD++I  D
Sbjct: 245 TLWLEREYMDSFERFNDKLPAKEDFHSTMYDQHIPED 281


>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
          Length = 1063

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 154 LSNIYNKCQHRYVRERYIQGGGVGIT 77
           L+++ N  Q +YV    +Q GGVGIT
Sbjct: 48  LTSLVNLSQGKYVESCVLQVGGVGIT 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,508,122
Number of Sequences: 59808
Number of extensions: 331208
Number of successful extensions: 1512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)