Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    25   2.1  
AB107248-1|BAE72063.1|  278|Anopheles gambiae Bcl-2 family prote...    24   2.8  
U02588-1|AAA18901.1|  110|Anopheles gambiae translation initiati...    23   6.5  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   8.6  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   8.6  

>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -3

Query: 350 NSYDASTHKTDIHNLFHLLLYDEYIRHDRSRPSSSCKINTKFIYIKLKNDLTAEIIQKLQ 171
           N   A      +HN    LLY +   H+R+  S    +  K I I++  +L   +I  L 
Sbjct: 105 NQKSADIKHRALHNEIKSLLYQKRFEHERNNRSREFML--KLIAIRMLVNLVVFVILLLA 162

Query: 170 Y*RLYTI 150
              +Y +
Sbjct: 163 AITIYVL 169


>AB107248-1|BAE72063.1|  278|Anopheles gambiae Bcl-2 family protein
           Anob-1 protein.
          Length = 278

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 293 VINEINCVCLSYVCSRRTS*CYVDRCIMCVAKNSHVSSPASDGFARQRAIFKFVLAVL 466
           VIN+  C+C  Y+ +R      ++R I+   +NS     A  G     A+ +  L +L
Sbjct: 64  VINQGKCLCGEYIRARLKRSGLLNRKILQRLRNSMEHCMAGSGGLGGGAVVREALPIL 121


>U02588-1|AAA18901.1|  110|Anopheles gambiae translation initiation
           factor protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 307 KLCMSVLCVLASYELMLRRSVYNVCRKEFAC 399
           K   +V  + A Y+L   + +   C+KEFAC
Sbjct: 39  KTLTTVQGLSAEYDL---KKIVRACKKEFAC 66


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 353 CYVDRCIMCVAKNSHVS-SPASDGFARQRAI 442
           CY+DR +  V+ +  VS +P S     +RA+
Sbjct: 815 CYIDRSVCIVSPDGGVSWTPISLAALLERAV 845


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 431  GERSRRSPASLHANSLRHTLYTDRRNINSYDASTHKTDIHNLFHLLLYDEYIRHDR 264
            GERS  + A L A  L   + T    ++ YD  T + + H +  LLL +   + DR
Sbjct: 1036 GERSYATVAFLIA--LWSCVSTPFFFLDEYDVFTDQVNRHTITRLLLNEAMKKPDR 1089


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,519
Number of Sequences: 2352
Number of extensions: 11189
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50040333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)