Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF175223-1|AAD52614.1| 3469|Drosophila melanogaster SANT domain ...    31   1.3  
AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC...    31   1.3  
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB...    31   1.3  
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA...    31   1.3  

>AF175223-1|AAD52614.1| 3469|Drosophila melanogaster SANT domain
            protein SMRTER protein.
          Length = 3469

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 21   AGAQPHGS*LQRVIASPDAVMPTPP 95
            AG+ PHG+ +Q++   P AV P PP
Sbjct: 1940 AGSLPHGTSVQKLTTRPAAVAPPPP 1964


>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
            isoform C protein.
          Length = 3604

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 21   AGAQPHGS*LQRVIASPDAVMPTPP 95
            AG+ PHG+ +Q++   P AV P PP
Sbjct: 2075 AGSLPHGTSVQKLTTRPAAVAPPPP 2099


>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
            isoform B protein.
          Length = 3604

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 21   AGAQPHGS*LQRVIASPDAVMPTPP 95
            AG+ PHG+ +Q++   P AV P PP
Sbjct: 2075 AGSLPHGTSVQKLTTRPAAVAPPPP 2099


>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
            isoform A protein.
          Length = 3604

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 21   AGAQPHGS*LQRVIASPDAVMPTPP 95
            AG+ PHG+ +Q++   P AV P PP
Sbjct: 2075 AGSLPHGTSVQKLTTRPAAVAPPPP 2099


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,505,918
Number of Sequences: 53049
Number of extensions: 490275
Number of successful extensions: 1245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)