Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2042
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08336.1 68417.m01377 hypothetical protein                          34   0.071
At4g18420.1 68417.m02733 hypothetical protein                          30   1.1  
At3g42200.1 68416.m04342 hypothetical protein several hypothetic...    30   1.1  
At3g42810.1 68416.m04483 hypothetical protein hypothetical prote...    29   2.0  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   2.7  
At2g01910.1 68415.m00125 microtubule associated protein (MAP65/A...    28   4.6  
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino...    27   8.1  
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do...    27   8.1  

>At4g08336.1 68417.m01377 hypothetical protein
          Length = 157

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 352 MLRRSVYNVCRKEFACKLAGERRLRSPTGDF*ICTRSLINEI 477
           ++ +SV N CR  + C  A + RLR+    F +   +L+NEI
Sbjct: 36  LISKSVPNPCRTYYRCDFAAKNRLRNDDHTFKLVDEALLNEI 77


>At4g18420.1 68417.m02733 hypothetical protein 
          Length = 154

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 349 LMLRRSVYNVCRKEFACKLAGERRLRSPTGDF*ICTRSLINEI 477
           +++ +S  N CR+ + C LA   RLR+    F     +L+NEI
Sbjct: 35  VLISKSDSNPCRRYYRCGLAALNRLRNDEHTFKWVDDALLNEI 77


>At3g42200.1 68416.m04342 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 134

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 352 MLRRSVYNVCRKEFACKLAGERRLRSPTGDF*ICTRSLINEI 477
           ++ +S  N C++ + C  A + RLR+    F    ++L+NEI
Sbjct: 36  LISKSDLNPCQRYYRCGFAAKHRLRNDEHTFKWVDKALLNEI 77


>At3g42810.1 68416.m04483 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 154

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 352 MLRRSVYNVCRKEFACKLAGERRLRSPTGDF*ICTRSLINEI 477
           ++ +S  N CR+ + C    + RLR+    F     +L+NEI
Sbjct: 36  LISKSDMNPCRRYYRCGFTAKHRLRNDEHTFKWVDEALLNEI 77


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 332 CSRRTS*CYVDRCIMCVAKNSHVSSPASDGFARQRAIFKFVLA 460
           CS      +V R ++C   N H     SDGF ++R I + V A
Sbjct: 9   CSSFDFPSFVSRRLLCPCSNEHGLIVFSDGFTKRRRILRRVHA 51


>At2g01910.1 68415.m00125 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 567

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 240 NQYKVHLYKI-KKRSDR*NYTKITILKTVHYLIYTINASIDMCVSVIYRAVGSASQRQA 67
           N+Y+ HL  + K++SDR N   +  +  VH L   +       VS ++ ++    Q Q+
Sbjct: 130 NEYQTHLRTLQKEKSDRLNKV-LGYVNEVHALCGVLGVDFSQTVSAVHPSLHRTDQEQS 187


>At1g44820.1 68414.m05134 aminoacylase, putative /
           N-acyl-L-amino-acid amidohydrolase, putative similar to
           aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
           ACY-1)[Homo sapiens] SWISS-PROT:Q03154
          Length = 438

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 234 YKVHLYKIKKRSDR*NYTKITILKTVHYLIYTINASIDMCVSVIY 100
           +  HL  +   S++  Y   +  KT+   IY   A  D C+ V Y
Sbjct: 94  FNSHLDSVPAESEKWTYPPFSAHKTIDGHIYARGAQDDKCIGVQY 138


>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 1013

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 219 INELCIDFTRRARPATVVPDVF 284
           I E+C  FTR  +P ++VP V+
Sbjct: 929 IFEMCFTFTRCTKPVSLVPPVY 950


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,579
Number of Sequences: 28952
Number of extensions: 218333
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)