Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2039
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.58 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.58 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.58 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 148 ILILGLDGAGKTTILYKL 201
           + ILG  GAGKTT+L  L
Sbjct: 107 LAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 148 ILILGLDGAGKTTILYKL 201
           + ILG  GAGKTT+L  L
Sbjct: 107 LAILGSSGAGKTTLLNTL 124


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 443 EPRYSLFLXHKQDXAGCFDNXPRXPQXPGLG 535
           + R+   + H      CF   PR P  PG G
Sbjct: 181 QQRWQNSIRHSLSFNDCFVKVPRTPDKPGKG 211


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 330 TSPIRPNTGLSPKIPHL 280
           T  I P+ GLSP  PHL
Sbjct: 227 TGLIPPHPGLSPHPPHL 243


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 330 TSPIRPNTGLSPKIPHL 280
           T  I P+ GLSP  PHL
Sbjct: 119 TGLIPPHPGLSPHPPHL 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,484
Number of Sequences: 336
Number of extensions: 2238
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)