Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2039
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 141 7e-35
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 131 6e-32
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 92 4e-20
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 72 6e-14
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 43 3e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 40 2e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 36 0.003
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 34 0.012
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 34 0.016
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 33 0.037
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 32 0.048
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 31 0.11
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 30 0.20
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.26
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 29 0.34
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.60
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 29 0.60
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 1.4
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 1.4
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.4
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 26 3.2
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 7.3
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.3
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 7.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 7.3
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 7.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.7
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 9.7
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 9.7
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 141 bits (341), Expect = 7e-35
Identities = 69/124 (55%), Positives = 88/124 (70%)
Frame = +1
Query: 94 GWXI*XLXXDCXGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNL 273
G I L G REMRIL++GLD AGKTTILYKL++GE+VTTIPTIGFNV V Y+N+
Sbjct: 2 GLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61
Query: 274 KFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXI 453
F VWD+GGQ IRP WR Y+ NT II+VV+S DR+RI + ++L M+ + R +
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDEL-RDAL 120
Query: 454 LVVF 465
L+VF
Sbjct: 121 LLVF 124
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 131 bits (317), Expect = 6e-32
Identities = 61/119 (51%), Positives = 83/119 (69%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIR 315
+EMRIL+LGLD AGKTTILYKL++ + V TIPT+GFNV VTYKN+KF VWD+GGQ IR
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR 79
Query: 316 PYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQTGXGRM 492
P WR Y+ T +I+VV+SAD +RI ++ +L ++ + +LV+ Q G +
Sbjct: 80 PLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGAL 138
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 92.3 bits (219), Expect = 4e-20
Identities = 45/109 (41%), Positives = 71/109 (65%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIR 315
RE+R+L+LGLD AGKTTIL L +V PT GF + + + L+F +WD+GGQ ++R
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLR 74
Query: 316 PYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVV 462
+W+ Y+ +T+AII+VV+S D R+ ++ L ++ + T ILV+
Sbjct: 75 NFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVL 123
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 71.7 bits (168), Expect = 6e-14
Identities = 34/109 (31%), Positives = 60/109 (55%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIR 315
+ ++L LGLD AGKTT+L+ L+ + PT+ ++ N++F +DLGG R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 316 PYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVV 462
WR Y+ + I+Y+V+ D +R+ SK +L ++ + R L++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLIL 127
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 43.2 bits (97), Expect = 3e-05
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVXQVTY----KNLKFQVWDLGGQTS 309
++L++G G GK+ +L + + I TIG + T+ K +K Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 310 IRPYWRCYYGNTDAIIYVVNSADRD 384
R YY II V + D+D
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQD 94
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 142 MRILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFN----VXQVTYKNLKFQVWDLGGQT 306
+++L++G G GK+ +L + + I TIG + ++ K +K Q+WD GQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 307 SIRPYWRCYYGNTDAIIYVVNSADR 381
R YY I+ + + D+
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDK 94
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +1
Query: 232 TIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRDR 387
T+G + T +L+ +++D+GGQ + R W + N ++II+ V+ D D+
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 34.3 bits (75), Expect = 0.012
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEV-VTTIPTIG--FNVXQVTYKN--LKFQVWDLGGQTS 309
+ +++G G GK+ +L + E + + TIG F + N +K Q+WD GQ
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 310 IRPYWRCYY-GNTDAIIY--VVNSADRDRIG 393
R YY G A+I + + D +G
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVG 102
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.9 bits (74), Expect = 0.016
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Frame = +1
Query: 142 MRILILGLDGAGKTTILYKL-------QVGEVV-----TTIPTIGFNVXQVTYKNLKFQV 285
++I++ G G GK+ +L + QV V + I ++G Q K +K Q+
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQ---KRIKLQI 66
Query: 286 WDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRD 384
WD GQ R R YY + V + ++D
Sbjct: 67 WDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKD 99
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 32.7 bits (71), Expect = 0.037
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 148 ILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWR 327
+ ++G +GKT++ +L E TT+P+I N + +K + V DL G + +
Sbjct: 40 VFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN--EAVWKYGAWLV-DLPGHPRAKRWIT 96
Query: 328 CYYG---NTDAIIYVVNSADRDR 387
+ N A+++V+NSA DR
Sbjct: 97 TKFSGNYNVKAVVFVLNSATIDR 119
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.048
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNV----XQVTYKNLKFQVWDLGGQTS 309
+++++G G GKTT + + GE I T+G V + + F VWD GQ
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 310 IRPYWRCYY--GNTDAIIYVVNS 372
+ YY G I++ V S
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTS 93
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 31.1 bits (67), Expect = 0.11
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Frame = +1
Query: 142 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVXQVTY--KNLKFQVWDLGGQT 306
++++ILG G GKT+I+ + + TIG F +V K + Q+WD GQ
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 307 SIRPYWRCYYGNTD--AIIYVVNSA 375
+ +Y D ++Y VN++
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNS 93
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.3 bits (65), Expect = 0.20
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +1
Query: 142 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIGFNVXQ----VTYKNLKFQVWDLGGQT 306
++++ILG G GKT ++ + + TIG + V K + Q+WD GQ
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 307 SIRPYWRCYYGNTDAIIYVVN 369
+ +Y D + V N
Sbjct: 69 RFQSLGMAFYRGADCCVIVYN 89
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVV 219
R+ ILG +GAGK+T++ K+ +GEV+
Sbjct: 721 RVAILGPNGAGKSTLI-KVLIGEVI 744
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 29.5 bits (63), Expect = 0.34
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTTI-PTIGFNVXQ---VTYKNLKFQVWDLGGQTSI 312
+I+ILG AGKT++L G PTI N V +++ +WD GQ
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 313 RPYWRCYYGNTDAII--YVVNSAD 378
Y +T I+ + V+S D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTI 237
+E+R++I G G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 142 MRILILGLDGAGKTTILYKLQVGEV-VTTIPTIGFNVXQVTYK----NLKFQVWDLGGQ 303
+++ ++G GKT+++ G + T+G N + T + F +WDLGGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 130 GAREMRILILGLDGAGKTTILYKLQV 207
G ++++L+LG +GKTTI+ ++++
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.5 bits (58), Expect = 1.4
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Frame = +1
Query: 145 RILILGLDGAGKTT---ILYKLQVGEVVTTI-PTIGFNVXQVTYK-NLKFQVWDLGGQTS 309
++L++G G+GK++ I++ V + + TI V + NL +WD GGQ +
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 310 IRPYWRC-----YYGNTDAIIYVVNSADRD 384
+ + N +IYV + R+
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -2
Query: 402 FRYSYSIPVS*IYNIYYCICVAIVTSPIRPN 310
F ++Y++ S +YN + +C + T+P + N
Sbjct: 494 FDFTYNLSESEVYNTVFNLCDELYTTPCKKN 524
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 268 NLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYV 363
++K ++WD GQ + YY N + I V
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVV 94
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 217 VTTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVN 369
V IP IG N YKN+K ++ + I ++R Y N II V++
Sbjct: 256 VNRIPGIGHN-----YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMS 301
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 393 SYSIPVS*IYNIYYCICVAIVTSPIRPNTGLSPKIPHLEL 274
S S +S + N+ Y C S + PN G + HL+L
Sbjct: 697 SISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDL 736
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 154 ILGLDGAGKTTILYKLQVGEVVTTIPTIGF 243
I+ LDG G T +L K V PT F
Sbjct: 275 IMALDGVGTTALLVKASVHRDGALFPTFPF 304
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 133 AREMRILILGLDGAGKTTI 189
++ I+++G+ GAGKTTI
Sbjct: 861 SKNASIILIGMRGAGKTTI 879
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 278 NLRFLYVTCXTLNPIVGIVVTTSPTCNL*RIVVF 177
N R++ +C + I GI+++ SP+ L +VF
Sbjct: 113 NRRYILFSCVIIGSISGIILSWSPSSFLLGKIVF 146
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 133 AREMRILILGLDGAGKTTILYKL 201
A E LILG+ G GKTT + L
Sbjct: 946 AAEHYSLILGMPGTGKTTTISSL 968
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 339 AIVTSPIRPNTGLSPKIPHLELEIFICDLXYVEPNRRYS 223
+I+T P+ + PK+PHL +I I + P+ RY+
Sbjct: 245 SILTEPLPDISKSCPKLPHLIFKI-IEKMTRKNPDERYT 282
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 148 ILILGLDGAGKTTILYKL 201
I+++GL G+GKTT KL
Sbjct: 104 IMMVGLQGSGKTTTCSKL 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,100
Number of Sequences: 5004
Number of extensions: 36835
Number of successful extensions: 130
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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