Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2039
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 6e-35
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 142 1e-34
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 130 7e-31
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 119 1e-27
SB_37042| Best HMM Match : Arf (HMM E-Value=0) 110 8e-25
SB_18358| Best HMM Match : Arf (HMM E-Value=0) 99 2e-21
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 95 3e-20
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 90 1e-18
SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44) 83 1e-16
SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36) 80 1e-15
SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_15207| Best HMM Match : Arf (HMM E-Value=1.9e-05) 54 6e-08
SB_7588| Best HMM Match : DcpS (HMM E-Value=0) 52 2e-07
SB_214| Best HMM Match : Arf (HMM E-Value=0) 47 9e-06
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 45 5e-05
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 6e-05
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 44 1e-04
SB_8302| Best HMM Match : G-alpha (HMM E-Value=0) 40 0.001
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 40 0.001
SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21) 38 0.007
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 37 0.012
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44) 36 0.017
SB_44625| Best HMM Match : Ras (HMM E-Value=0) 36 0.029
SB_10811| Best HMM Match : Ras (HMM E-Value=0) 34 0.067
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12) 33 0.20
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 33 0.20
SB_54971| Best HMM Match : Ras (HMM E-Value=0) 31 0.62
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 31 0.62
SB_45581| Best HMM Match : Ras (HMM E-Value=0.069) 31 0.62
SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 30 1.1
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 30 1.4
SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34) 29 2.5
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_17524| Best HMM Match : Ras (HMM E-Value=2.1e-10) 29 2.5
SB_16779| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 28 4.4
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19) 27 7.6
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 144 bits (348), Expect = 6e-35
Identities = 65/115 (56%), Positives = 86/115 (74%)
Frame = +1
Query: 130 GAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTS 309
G ++MRIL++GLD AGKTTILYKL++GE+VTTIPTIGFNV V YKN+ F VWD+GGQ
Sbjct: 14 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGGQDK 73
Query: 310 IRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQ 474
IRP WR Y+ NT +IYVV+S DR+R+ SK++L M++ + +LV+ Q
Sbjct: 74 IRPLWRHYFQNTQGLIYVVDSNDRERVNESKEELNKMLQEDELKDAVVLVMANKQ 128
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 142 bits (345), Expect = 1e-34
Identities = 65/112 (58%), Positives = 87/112 (77%)
Frame = +1
Query: 130 GAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTS 309
G +EMRIL++GLD AGKTTILYKL++GE+VTTIPTIGFNV V YKN+ F VWD+GGQ
Sbjct: 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
Query: 310 IRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVF 465
IRP WR Y+ NT +I+VV+S DR+R+G ++++L M+ + R +L+VF
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELNRMLNEDEL-RDAVLLVF 124
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 130 bits (314), Expect = 7e-31
Identities = 61/115 (53%), Positives = 81/115 (70%)
Frame = +1
Query: 130 GAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTS 309
G E+R+L++GLD AGKTTILY L++ E V TIPTIGFNV V YKN+KF VWD+GGQ
Sbjct: 87 GKDELRLLMVGLDAAGKTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDK 146
Query: 310 IRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQ 474
IR WR Y+ T +I+VV+S DRDRI +K++L ++K + R +LV+ Q
Sbjct: 147 IRLLWRLYFQETQGLIFVVDSNDRDRIQEAKEELFKLLKEEELKRAALLVLANKQ 201
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 119 bits (287), Expect = 1e-27
Identities = 53/107 (49%), Positives = 76/107 (71%)
Frame = +1
Query: 154 ILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCY 333
++GLD AGKTTILY+L++ EVV+T+PT+GFNV VTYKN+ F VWD+GGQ IR WR Y
Sbjct: 1 MIGLDNAGKTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIRALWRVY 60
Query: 334 YGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQ 474
Y II+VV+SADR+R ++++L ++ + + +LV+ Q
Sbjct: 61 YQGCQGIIFVVDSADRERAEEARNELHKLLAEEELQQVILLVIANKQ 107
>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
Length = 188
Score = 110 bits (264), Expect = 8e-25
Identities = 53/116 (45%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Frame = +1
Query: 130 GAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQV-TYKNLKFQVWDLGGQT 306
G R++RI++LGLD AGKTTILYKL++ E V+TIPTIGFNV + KN+ +WD+GGQ
Sbjct: 16 GNRQVRIVMLGLDAAGKTTILYKLKLKETVSTIPTIGFNVETLQPTKNVTLTIWDVGGQD 75
Query: 307 SIRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQ 474
IRP WR Y+ T+ +++VV+S+D R+ +K++L ++ ++VV Q
Sbjct: 76 KIRPLWRHYFQGTEGLLFVVDSSDVLRMPEAKEELHGVLDSDEFRDVPVVVVANKQ 131
>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
Length = 214
Score = 99.1 bits (236), Expect = 2e-21
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVT-YKNLKFQVWDLGGQTSI 312
R +++LGLD +GKT+ILY+ + E V T+PT FNV + +K ++F+VWD+GG+
Sbjct: 20 RPFHVVMLGLDKSGKTSILYRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGGREQN 79
Query: 313 RPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILV 459
RP W+ Y TDA+IYVV+S ++ ++D+L ++ +N IL+
Sbjct: 80 RPLWKAYARQTDAVIYVVDSTSAGKLEEARDELFNLLNSAQLNGAPILI 128
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/100 (44%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = +1
Query: 178 KTTILYKLQVGEVVTTIPTIGFNVXQVT-YKNLKFQVWDLGGQTSIRPYWRCYYGNTDAI 354
KTTILYKL++ E V T+PT+ FNV ++ KN+ F VWD+GGQ IR WR Y+ + I
Sbjct: 122 KTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIRRLWRHYFQGAEGI 181
Query: 355 IYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQ 474
I+VV+SAD++RI +++L +++ +N ++VV Q
Sbjct: 182 IFVVDSADKERIFEVREELTRVLQHSELNGVPVVVVANKQ 221
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 90.2 bits (214), Expect = 1e-18
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = +1
Query: 130 GAREMRILILGLDGAGKTTILYKLQVGEVVTTI-PTIGFNVXQVTYKNLKFQVWDLGGQT 306
G E R L DG+ ++ Q + + P GFNV V YKN+ F VWD+GGQ
Sbjct: 462 GQTEQRFFALAQDGSRRSRYKGSRQKTHIQAMVSPVQGFNVETVEYKNISFTVWDVGGQD 521
Query: 307 SIRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVF 465
IRP WR Y+ NT +I+VV+S DR+R G +K++L M+ + R +L+VF
Sbjct: 522 KIRPLWRHYFQNTQGLIFVVDSNDRERAGEAKEELSRMLAEDEL-RDAVLLVF 573
>SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 86.6 bits (205), Expect = 1e-17
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Frame = +1
Query: 139 EMRILILGLDGAGKTTILYKLQVGEVV---TTIPTIGFNVXQVTYKNLKFQVWDLGGQTS 309
E RIL+LGLDG+GK+ L L G+ +T T GFNV +T L +W++GG
Sbjct: 166 EKRILVLGLDGSGKSVFLSALSQGDSSKRPSTTKTEGFNVVCLTTDGLNLNIWEIGGDEK 225
Query: 310 IRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQ 474
R YW + +T ++YVV+S+D DR S+D+L ++ +N +L+V Q
Sbjct: 226 YRAYWPNFIADTQLLVYVVDSSDPDRFNESRDNLKSLLSNSLLNGVPVLLVASKQ 280
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 86.2 bits (204), Expect = 2e-17
Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQVTYK-NLKFQVWDLGGQTSI 312
REMRIL+LGLD +GKTTIL L +V+ PT GFN+ V K + VWD+GGQ I
Sbjct: 16 REMRILLLGLDNSGKTTILKSLASEDVLHITPTQGFNIKSVQSKGGFRLNVWDIGGQRKI 75
Query: 313 RPYWRCYYGNTDAI 354
RPYW+ Y+ NTD +
Sbjct: 76 RPYWKNYFENTDIL 89
>SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)
Length = 257
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +1
Query: 298 GQTSIRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVVFXPQT 477
GQTSIRPYWRCYY NTDA+IYVV+S D+DRIGISK +L+ M++ + + ++V Q
Sbjct: 155 GQTSIRPYWRCYYANTDAVIYVVDSVDKDRIGISKQELLAMLEEDELKKAILIVFANKQD 214
Query: 478 GXGRM 492
G M
Sbjct: 215 MEGAM 219
>SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)
Length = 260
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Frame = +1
Query: 139 EMRILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVXQVTYKNLKFQVWDLGGQTSIR 315
EM + ++GL +GKTT + + G+ IPT+GFN+ +V+ N+ +VWD+GGQ R
Sbjct: 20 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVSKGNVTIKVWDIGGQPRFR 79
Query: 316 PYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILVV 462
W Y + I+Y+V++AD D++ SK++L +++ + ILV+
Sbjct: 80 SMWERYCRGVNCIVYMVDAADHDKLEASKNELHNLLEKPQLAGIPILVL 128
>SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 57.6 bits (133), Expect = 6e-09
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +1
Query: 274 KFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDL 411
K +WD+GGQ S+R YWR Y+ +TD +I+VV+SAD+ R+ K +L
Sbjct: 3 KLNIWDVGGQRSLRSYWRNYFESTDGLIWVVDSADQRRLADCKMEL 48
>SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Frame = +1
Query: 139 EMRILILGLDGAGKTTIL--YKLQVGEVVTTIP------TIGFNVXQVTYKNLKFQVWDL 294
E ILILGLD AGKTT+L K + + IP T+G N+ ++T ++K WDL
Sbjct: 21 EYFILILGLDNAGKTTLLEQIKRKFCKTYNGIPFEKITTTVGLNIGKITISHVKLMFWDL 80
Query: 295 GGQTSIRPYW 324
GGQ +R W
Sbjct: 81 GGQQELRTLW 90
>SB_15207| Best HMM Match : Arf (HMM E-Value=1.9e-05)
Length = 259
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +1
Query: 196 KLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNT 345
K+++ V + GFNV V +++LKF +WD+GG +RP WR YY NT
Sbjct: 208 KMEMRAVALGLDGAGFNVETVEHRSLKFTIWDVGGLQKLRPLWRHYYLNT 257
>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
Length = 446
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +1
Query: 289 DLGGQTSIRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILV 459
D+GGQ IRP WR Y+ + +I+VV+ ADRDRI ++ +L ++ + IL+
Sbjct: 143 DVGGQDKIRPLWRHYFAGSQGLIFVVDCADRDRIDEARKELQRIINDREMKDVIILI 199
>SB_214| Best HMM Match : Arf (HMM E-Value=0)
Length = 148
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/79 (22%), Positives = 44/79 (55%)
Frame = +1
Query: 226 IPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRDRIGISKD 405
+PT+ +++ ++F +DLGG R W+ Y+ + I+++++ AD +R+ SK
Sbjct: 5 VPTLHPTSEELSMGGMRFTTFDLGGHRQARRIWKDYFPAVNGIVFIIDCADFERLAESKK 64
Query: 406 DLVXMVKGXXINRTXILVV 462
+L ++ ++ +L++
Sbjct: 65 ELDSLLADEQLSSCPVLIL 83
>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVV-----TTIPTIGFNVXQVTYKNLKFQVWDLGGQTS 309
++L++G G GKT+++ + G T +G V + +K Q WD GQ
Sbjct: 13 KVLVVGDPGVGKTSLIRRFTKGYFCDNSSSTVGVDVGTRVLDIHGDRVKLQCWDTAGQEK 72
Query: 310 IRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILV 459
R + YY N DA+I V + +R L+ + K N +LV
Sbjct: 73 FRGITQSYYRNADAVILVFDITNRGTFASIPQWLMNVQKYTNKNILKVLV 122
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Frame = +1
Query: 139 EMRILILGLDGAGKTTILYKLQVGEVV-TTIPTIG--FNVXQVTYKN---LKFQVWDLGG 300
+ RI+++G GK+++L + G+ + PT+G F+V + K +K Q+WD G
Sbjct: 13 QFRIILIGDSTVGKSSLLRQFTEGQFFENSDPTVGVDFHVRVLELKGDVRIKLQIWDTAG 72
Query: 301 QTSIRPYWRCYYGNTDAIIYVVNSADRD 384
Q R YY NT + + + +RD
Sbjct: 73 QERFRSITYSYYRNTVGCLIIYDITNRD 100
>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +1
Query: 133 AREMRILILGLDGAGKTTILYKLQVGEV-VTTIPTIGFNV----XQVTYKNLKFQVWDLG 297
A+ +I+I+G GKT + Y+L G+ T TIG + ++ + +K Q+WD
Sbjct: 44 AKTFKIIIIGDSNVGKTCLAYRLCTGKFPERTETTIGVDFWEKSLELNGEFVKLQLWDTA 103
Query: 298 GQTSIRPYWRC-YYGNTDAIIYV 363
GQ R C YY N +A++++
Sbjct: 104 GQERFRKSMVCHYYRNVNAVVFM 126
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIG--FNVXQVTY--KNLKFQVWDLGGQTS 309
++L++G G GK+++L + T I TIG F + +T K +K Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKSSLLLRFADDTFSNTYISTIGVDFKIRTLTVDGKTIKLQIWDTAGQER 69
Query: 310 IRPYWRCYYGNTDAI--IYVVNSAD 378
R YY + I IY VN ++
Sbjct: 70 FRTLTTAYYRSAHGIVLIYDVNESE 94
>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
Length = 315
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +1
Query: 220 TTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRDRIGIS 399
T + T G Q YK L F+++D+GGQ S R W + + AIIY V + D + +
Sbjct: 178 TRVKTTGIVEVQFDYKRLHFKLFDVGGQRSERKKWIHCFEDVTAIIYCVALSAYD-LSLE 236
Query: 400 KDD 408
+D+
Sbjct: 237 EDE 239
>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 220 TTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYW-RCYYGNTDAIIYVVNSADRDRIGI 396
T + T G T+K+L F+++D+GGQ S R W C+ G T AII+ V + D +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVT-AIIFCVALSAYDLVLA 235
Query: 397 SKDDLVXMVK 426
+++ M++
Sbjct: 236 EDEEMNRMME 245
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +1
Query: 133 AREMRILILGLDGAGKTTILYKLQV 207
ARE+++L+LG +GK+TI+ ++++
Sbjct: 31 AREVKLLLLGAGESGKSTIVKQMKI 55
>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 220 TTIPTIGFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVV 366
T + T G Q YK L F+++D+GGQ S R W + + AIIY V
Sbjct: 226 TRVKTTGIVEVQFDYKRLHFKLFDVGGQRSERKKWIHCFEDVTAIIYCV 274
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +1
Query: 265 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRDRI 390
KN+ F VWD+GGQ ++R ++ + + +IYVV+S D R+
Sbjct: 16 KNVHFAVWDIGGQPNLRKHY--FTDDKSGLIYVVDSTDIQRL 55
>SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVXQVTY--KNLKFQVWDLGGQTS 309
+I+++G GKT ++ + G PTIG F + V + +K Q+WD GQ
Sbjct: 9 KIILVGDANVGKTCLVRQFTKGYFPPNQGPTIGVDFTIKTVDVDGEKVKLQIWDTAGQER 68
Query: 310 IRPYWRCYYGNTDAII 357
R + YY N D +I
Sbjct: 69 FRSITQSYYHNADGVI 84
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 142 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVXQVTYKN--LKFQVWDLGGQT 306
++ILI+G G GK+++L + I TIG F V +T + K +WD GQ
Sbjct: 9 LKILIVGESGVGKSSLLLRFTDDTFDPDIGATIGVDFKVKTLTVEGNKAKLAIWDTAGQE 68
Query: 307 SIRPYWRCYYGNTDAIIYVVNSADRD 384
R YY +I V ++ R+
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDTNSRE 94
>SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21)
Length = 115
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIG--FNVXQV--TYKNLKFQVWDLGGQTS 309
++LI+G GKT+ L++ + + T+G F V V K +K Q+WD GQ
Sbjct: 23 KLLIIGNSAVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER 82
Query: 310 IRPYWRCYYGNTDAIIYVVNSADRDRIGISKD 405
R YY I + + + + +D
Sbjct: 83 YRTITTAYYRGAMGFILMYDITNEESFQAVQD 114
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 36.7 bits (81), Expect = 0.012
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEV-VTTIPTIGFNVX----QVTYKNLKFQVWDLGGQTS 309
+I+++G G GK+++L + E + + TIG QV K +K QVWD GQ
Sbjct: 14 KIVLIGDSGVGKSSLLSRFTRNEFDIESKSTIGVEFATRSIQVEGKIIKAQVWDTAGQER 73
Query: 310 IRPYWRCYY-GNTDAII 357
R YY G A++
Sbjct: 74 YRAITSAYYRGAVGAVL 90
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +1
Query: 130 GAREMRILILGLDGAGKTTILYKLQVGEVV-TTIPTIGFNVXQVTYKN------LKFQVW 288
G M+++++G + GKTT++++L + T G ++ + K F++W
Sbjct: 548 GYYSMKLMLVGREAQGKTTLMHRLMLDNTYFINSATNGISMEEFRLKKDFLHREFIFKIW 607
Query: 289 DLGGQTSIRPYWRCYYGNTDAIIYVVN 369
D GGQ +C+ I V N
Sbjct: 608 DFGGQEDYYATHQCFISTLSLYILVWN 634
>SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44)
Length = 212
Score = 36.3 bits (80), Expect = 0.017
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVT-TIPTIGFN----VXQVTYKNLKFQVWDLGGQTS 309
++++LG G GKT++ Y+L+ TIG + ++ K + VWD G
Sbjct: 13 KVVLLGEAGVGKTSLFYRLKENHFTPGRRNTIGIDSCSKFVKIGEKQVTLSVWDTAGVER 72
Query: 310 IRPYWRCYYGNTDAIIYVVNSAD 378
R + YY A I + N D
Sbjct: 73 FRTVTKNYYRGAHACILMFNVDD 95
>SB_44625| Best HMM Match : Ras (HMM E-Value=0)
Length = 128
Score = 35.5 bits (78), Expect = 0.029
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +1
Query: 208 GEVVTTIPTIGFNVXQVTY--KNLKFQVWDLGGQTSIRPYWRCYYGNTDAII--YVVNSA 375
G +TTI + F + + + +K Q+WD GQ R YY T +I Y V SA
Sbjct: 4 GSYITTIG-VDFKIRTINIDGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA 62
Query: 376 D 378
D
Sbjct: 63 D 63
>SB_10811| Best HMM Match : Ras (HMM E-Value=0)
Length = 304
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 238 GFNVXQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRD 384
G + V K++K Q+WD GQ R R YY + V + + R+
Sbjct: 133 GSKIVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDISSRE 181
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 265 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVNSADRD 384
K +K Q+WD GQ R YY II V + D++
Sbjct: 76 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 115
>SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)
Length = 460
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTI----LYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQ 303
+ +R+++LG DG GK+ + L + +GE T+ + ++ Q+ +++ + D G+
Sbjct: 15 KPVRVVVLGKDGVGKSALTVRFLTRRFIGEYDQTLESTHRHILQIDNEDVSLDISDTAGE 74
Query: 304 TSIR 315
+R
Sbjct: 75 VRVR 78
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 32.7 bits (71), Expect = 0.20
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = +1
Query: 139 EMRILILGLDGAGKTTILYKLQVGEVVT-TIPTIGFNVXQVTY----KNLKFQVWDLGGQ 303
+ ++++LG GK++++ + G+ TIG T +KF++WD GQ
Sbjct: 21 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 80
Query: 304 TSIRPYWRCYYGNTDAIIYVVNSADRDRIGISK 402
YY A I V + ++D +K
Sbjct: 81 ERYHSLAPMYYRGAQAAIVVYDITNQDTFARAK 113
>SB_54971| Best HMM Match : Ras (HMM E-Value=0)
Length = 239
Score = 31.1 bits (67), Expect = 0.62
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +1
Query: 151 LILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVXQVTYKN----LKFQVWDLGGQTSIR 315
L +G G GKTT + + GE I T+G V + + +KF VWD GQ
Sbjct: 36 LQVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLIFFTSRGPIKFNVWDTAGQEKFG 95
Query: 316 PYWRCYY--GNTDAIIYVVNS 372
YY G I++ V S
Sbjct: 96 GLRDGYYIQGQCAIIMFDVTS 116
>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
Length = 1243
Score = 31.1 bits (67), Expect = 0.62
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 142 MRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQ 255
M+++++G+ G GKTT+L L+ + + + T+G V +
Sbjct: 667 MKLMVVGIQGYGKTTLLAALKGQPLPSNLSTVGIVVDE 704
>SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)
Length = 284
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 136 REMRILILGLDGAGKTT----ILYKLQVGEVVTTIPTIGFNV 249
R +R+++LG DG GK+ +L K +GE +T+ +GF +
Sbjct: 15 RSLRVVVLGQDGVGKSALTVRLLTKRFIGEYDSTLGEMGFYI 56
>SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 30.7 bits (66), Expect = 0.82
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Frame = +1
Query: 139 EMRILILGLDGAGKTTILYKLQVGEVVTTIP-TIGFNVXQVTY---------KNLKFQVW 288
++RI ++G G GKT++++ + E +++ TIG V Y K + W
Sbjct: 6 KVRIAVVGDSGVGKTSLVHLICHEESISSAAWTIGCTVEVKLYDYKEGMPGGKTFFLEFW 65
Query: 289 DLGGQTSIRPYWRCYYGNTDAIIYVVNSADR 381
D+GG + +Y + +I V + +R
Sbjct: 66 DIGGSANHENSRSIFYNGINGLILVHDLTNR 96
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTI----LYKLQVGEVVTTIPTIGFNVXQVTYKNLKFQVWDLGGQ 303
R ++++I+G DG GK+ + L K +GE T+ + +V + + ++ D G+
Sbjct: 860 RIVKVVIIGEDGVGKSALTVRFLTKRFIGEYDDTLESTYRQDAEVAGEVVAIELTDTAGE 919
Query: 304 TSIRPYWRCY-YGNTDAIIYVVNS 372
S RC G ++Y + S
Sbjct: 920 NSPAKLERCLEIGEVFVVLYSITS 943
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTIL------YKLQVGEVVTTIP-TIGFNVXQVTY-KNLKFQVWD 291
+++++ I+G +GAGKTT++ Y ++ V+ + T G + + ++L+ +V+D
Sbjct: 566 KQVKVTIVGGEGAGKTTLVKALGFKYNWKLSTVMDSEERTKGLEISNIDLNESLRMKVFD 625
Query: 292 LGGQT 306
LGG +
Sbjct: 626 LGGDS 630
>SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34)
Length = 241
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 265 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAII 357
+++K Q+WD GQ R + YY + + +I
Sbjct: 93 QDVKLQIWDTAGQERFRTITQSYYRSCNGVI 123
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 121 DCXGAREMRILILGLDGAGKTTILYKLQVGEV 216
D E RI ++G +G+GKTT+L K+ +GE+
Sbjct: 358 DISANNESRIAVVGDNGSGKTTLL-KILLGEL 388
>SB_17524| Best HMM Match : Ras (HMM E-Value=2.1e-10)
Length = 159
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEV------VTTIPTIGFNVXQVTYKNLKFQVWDLGGQT 306
+I + G G GKT+I +L E + I + + K LK +WD G
Sbjct: 10 KIALCGKMGVGKTSIYTRLSTDEFPEEEQSLHHIDQCFIPLVCICNKKLKIHLWDTLGME 69
Query: 307 SIRPYWRCYYGNTDAIIYVVNSAD 378
R +Y N+ ++ VV S D
Sbjct: 70 EYESLTRNHYSNS-KVVLVVYSLD 92
>SB_16779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQV 207
+ +R++++G DG GKT I Y L +
Sbjct: 13 KAVRVMVMGQDGVGKTDIRYTLAI 36
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 28.7 bits (61), Expect = 3.3
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Frame = +1
Query: 145 RILILGLDGAGKTTILY---KLQVGEVVTTIPTIGFNVX---QVTYKNLKFQVWDLGGQT 306
+++I+G GKT +L K Q EV +PT+ N +V K ++ +WD GQ
Sbjct: 5931 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 5988
Query: 307 SIRPYWRCYYGNTDAIIYVVNSADRDRIGISKDDLVXMVKGXXINRTXILV 459
Y +TD I+ + D + + VK N ILV
Sbjct: 5989 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 6039
>SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +1
Query: 136 REMRILILGLDGAGKTTILYKLQVGEVVTTI--PTIGFNVXQVTYK-----NLKFQVWDL 294
R ++L++G GK + + K V + + PTIG + T + ++ Q+W +
Sbjct: 17 RNFKVLVVGDILTGKQSFV-KRYVNNIWHPLYKPTIGVDFALKTIQWAQNTTIRLQIWLI 75
Query: 295 GGQTSIRPYWRCYYGNTDAII 357
GQ R YY DA +
Sbjct: 76 AGQERFSSMTRVYYKGADACV 96
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 133 AREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVXQV 258
A + +L+ G G GKTT+ K++ +PT GF ++
Sbjct: 49 AYKKHVLLTGPPGIGKTTLCSKVKQALASRGVPTQGFYTEEI 90
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTTIPT 234
R+LI G GAGKTT+ KL +PT
Sbjct: 374 RVLIEGESGAGKTTLCQKLAFDWAKGELPT 403
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 145 RILILGLDGAGKTTILYKLQVGEVVTTIPT 234
R+LI G GAGKTT+ KL +PT
Sbjct: 1776 RVLIEGESGAGKTTLCQKLAFDWAKGELPT 1805
>SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)
Length = 811
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 133 AREMRILILGLDGAGKTTILYKLQVGEVVTTI---PTIGFNV--XQVTYKNLKFQVWDLG 297
++ +++++LG GAGKT+ + L E + T+G + QV L+ QV D
Sbjct: 258 SKRIKLVLLGESGAGKTSCAHGLVECEAINQTLNDGTVGVVIRNWQVEPDGLEVQVVDCA 317
Query: 298 GQ 303
GQ
Sbjct: 318 GQ 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,803
Number of Sequences: 59808
Number of extensions: 268209
Number of successful extensions: 645
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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