Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2037
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   5.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.2  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 38  HXNQGTKYMVFGRSVXTIKLESRISYFIGKLCNQNLRI 151
           H + G +  ++G    T+ +  +I+ F+    N +LRI
Sbjct: 42  HSSYGRENFIYGSMNMTVAITDKIANFMLTFFNVSLRI 79


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 501 QLTYFYWNXXPIA 463
           Q + FYWN  PIA
Sbjct: 916 QWSSFYWNLLPIA 928


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 501 QLTYFYWNXXPIA 463
           Q + FYWN  PIA
Sbjct: 916 QWSSFYWNLLPIA 928


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 492 YFYWNXXPIAFPLFFHEI 439
           YFYW+   +    F H+I
Sbjct: 321 YFYWSFGFLIIQRFIHQI 338


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 120 IKYDMRLSSFMVXTDRPNTIY 58
           IKY+    +F+   +RP++IY
Sbjct: 194 IKYNPFAKAFLDAKERPDSIY 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,120
Number of Sequences: 336
Number of extensions: 2350
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)