Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2037
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   5.7  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    26   5.7  

>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 110 SYFIGKLCNQNLRIDI 157
           +YFIG  CNQNL + I
Sbjct: 94  AYFIGAFCNQNLFLAI 109


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 313 FCXYIQLNFY----LQITISTEFKFKKGFSVEDACAF 411
           FC ++Q  F     +Q+T   +F FK+G S+ED   F
Sbjct: 106 FCKWLQDVFQVPLVIQLTDDEKFLFKQGVSLEDCQRF 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,686
Number of Sequences: 5004
Number of extensions: 38505
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)