Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2034
(476 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.16
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 30 0.85
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 30 0.85
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 1.5
SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9) 29 1.5
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 29 2.6
SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4) 29 2.6
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4) 28 4.5
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1) 27 6.0
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 27 6.0
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 27 6.0
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) 27 6.0
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 27 6.0
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 6.0
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2) 27 6.0
SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 27 7.9
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 188 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 45
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 149 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYILKAS 27
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 30.3 bits (65), Expect = 0.85
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +3
Query: 201 CGVTCQR*--LGTSGCRQPSCQWRPSPDPGQVRSC--PRCPSLHTGIRSECRSPC 353
C VTC L T C + P P + R C P CP G SEC C
Sbjct: 222 CSVTCGEGIQLHTVVCSTGNQSQCKKPKPSEARKCQLPACPEWTVGKWSECSRTC 276
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 282 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR 371
GQ +SC RC + G++ EC P RP +R
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRR 226
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 59 ERTCGRREALD*IEASNNLGQPSSHIHGHRTCTLEGQTARR 181
E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 690 ECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9)
Length = 304
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 196 GSVELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKN 369
G V+ P+N D + + N +V+G P + ++R+ VH Y V ++++ L+N
Sbjct: 61 GPVQNPINHDTLRGEIRN-VVSGSPSKKISRWRREYRVHFYNEVGKIDSEKLKETLQN 117
>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 12 RCFEDRRLENVYQAVRSVRAEEEKHLIRL--RRQITSA-SHRRISTAIE 149
+ EDRR+ + R +A E++H+ + R +T A RRIS A+E
Sbjct: 76 KALEDRRITKELEGRRVTKALEDRHVTKALEDRHVTKALEDRRISKALE 124
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 6 LLRCFEDRRLENVYQAVRSVRAEEEKHLIRLRRQITS 116
L + E+R EN +A+ +R E E+ LIRL+ +ITS
Sbjct: 816 LAKIREEREQEN--KALAKIREEREQGLIRLQDEITS 850
>SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)
Length = 964
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 122 PSSHIHGHRTCTLEGQTARRSIYP-WVLWSYLSTMTWYQRLSATILS 259
P SH +GH + ++EG T YP WV TW + L +T +S
Sbjct: 917 PGSHAYGHPSHSMEGSTE----YPSWVSAVGKEYPTWVEDLDSTSVS 959
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +3
Query: 249 PSCQWRPSPDPGQ---VRSCPRCPSL 317
P C+W P+PD G C CP L
Sbjct: 161 PDCRWCPAPDCGYAVIATGCASCPKL 186
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 473 TXXXXVTRAHHKNPPLTHVTHSQH 402
T VT +H++P LTH H QH
Sbjct: 404 TTHPQVTHRYHQHPQLTHRYHHQH 427
>SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)
Length = 196
Score = 27.9 bits (59), Expect = 4.5
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Frame = -1
Query: 281 RIRRGSPLTRW-----LPTTAGTKS-SLTGNSTEPRDKLISSQSG--PQEYRFDG----R 138
++ GSP+TRW LP T + TG+ E + SQ G PQ YR G +
Sbjct: 95 KVTTGSPVTRWKVTTGLPVTRWKVTYRATGHKVESYLQGYRSQGGRLPQGYRSQGGRLPQ 154
Query: 137 GYATMAGR 114
GY + G+
Sbjct: 155 GYRSQGGK 162
>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
Length = 627
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 264 SIDKMVADNRWYQVIVDR*LHRTQG*IDLLAVWPSRVQVRWPWICDDG 121
S D + + R+ +VD HR Q I + + P + W + DDG
Sbjct: 225 STDPQMKEPRFSLTVVDSEQHRNQNGIFAIFIVPQGRETEWLFSSDDG 272
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -1
Query: 299 TAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 120
T P+L + + + +G SSL GN++ P L +S + PQ G + + A
Sbjct: 528 TDPSLGTASQSASIFGTAVNPSGQLSSLFGNTSHPSTTLTASTNNPQPSTQSGALFGSAA 587
>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 295
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 169 DCEEINLSLGSV-ELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIR 324
D E LS+ + +LP++ + + V H+++ + L +G + DV H R
Sbjct: 29 DAESFTLSIKTRGDLPISLTCIASKVLEHIIHSHVMKHLQHYGILTDVQHGFR 81
>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
Length = 832
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 194 WVLWSYLSTMTWYQ 235
WV+ SYL+ TWYQ
Sbjct: 65 WVITSYLTNCTWYQ 78
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 230 TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 57
TK TGN EP + Q G G+A G+GY T ++ Q + YAP
Sbjct: 3494 TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 3547
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +3
Query: 201 CGVTCQR*LG--TSGCRQPSCQWRPSPDPGQVRSCPR--CPSLHTGIRSECRSPC 353
C VTC + T C + S P V C + CP G SEC S C
Sbjct: 15 CSVTCGAGVKRRTVTCTSDNITCNESQKPPHVARCEKGECPRWTAGAWSECSSTC 69
>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
Length = 919
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 230 TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 57
TK TGN EP + Q G G+A G+GY T ++ Q + YAP
Sbjct: 38 TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 91
>SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 305 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEY 153
SG+AP RR L + T G+K S G+ST+ ++S E+
Sbjct: 211 SGSAPGSDLFRRRDFLEVDMDTDGGSKGSSVGSSTKGSKASLNSSDNSSEH 261
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 254 RWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQ 159
R+ TT GTK +G S PRD+ + + PQ
Sbjct: 225 RYQATTLGTKPQPSGPSHNPRDQATTLGTKPQ 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,767
Number of Sequences: 59808
Number of extensions: 353264
Number of successful extensions: 1163
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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