Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2034
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 32 0.24
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 32 0.24
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 32 0.24
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.24
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.24
Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 28 3.0
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 28 3.0
Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical p... 27 7.0
Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 27 7.0
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 7.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 7.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 7.0
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 27 7.0
AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown prote... 27 7.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 7.0
Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical p... 27 9.2
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 565 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 607
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 679 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 734
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 735 KISLSFLTFSPHGLLFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 211
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 269 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 90
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 89 QVLLFFRTYAPNGLIYIL 36
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical
protein C09G5.1 protein.
Length = 473
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 194 WVLWSYLSTMTWYQ-RLSATILSMETLAGSWPGSELSPMSITTYGY 328
+++W Y + WY R+S T+L M+ LA S+ + I +Y Y
Sbjct: 144 FLVWIYPNGTVWYDCRISLTVLCMQDLARYPLDSQNCGLRILSYAY 189
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
protein F20B10.1 protein.
Length = 1180
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 357 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQV 223
D ++ I +G +V+ D G + P+R+S K + D RW+++
Sbjct: 171 DVLIAQIIHGTVHVIFDFGSLT-----PSRISAGKALDDGRWHEM 210
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 174 RGDQFIPGFCGVTCQR*LGTSGCRQPSCQWRPSPDPGQV---RSCPRCPSLHTGIRSECR 344
+GDQ IPG C G G P C W+P V R P G +E R
Sbjct: 566 KGDQGIPGL-DAPCPT--GPDGLPLPYCSWKPMDGKNDVWERRKRASLPGAQPGKGAETR 622
Query: 345 SP 350
P
Sbjct: 623 PP 624
>Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical
protein Y41E3.19 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +3
Query: 156 LLRARLRGDQFIPGFCGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSL-HTGIR 332
LL R D ++ C + GT+GC C W ++ PR S+
Sbjct: 135 LLNTIGRCDHYLCTACYGLVKNSDGTNGCSSRQCFWNGENSETEICQRPRARSISEMSSN 194
Query: 333 SECRSPCS 356
S C CS
Sbjct: 195 SLCSEDCS 202
>Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical
protein T22A3.3a protein.
Length = 398
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 246 QPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 338
QPS W S D G + S P +G+RS+
Sbjct: 119 QPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 149
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 303 RCPSLHTGIRSECRSPCS 356
RCP + G RS CR CS
Sbjct: 679 RCPKGYKGCRSNCRHDCS 696
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 228 GTSGCRQPSCQWRPSPDPGQVRSCPRCPSLHTG 326
G+ G P P PGQ SC CP TG
Sbjct: 264 GSDGLPGPHGGTGPRGPPGQPGSCDHCPPPRTG 296
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 265 DPRRILARFGAVPDVHHYIRVSVLNAD 345
DPRR ARF A+ D HH I S +NAD
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNAD 1091
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 265 DPRRILARFGAVPDVHHYIRVSVLNAD 345
DPRR ARF A+ D HH I S +NAD
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNAD 1091
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 193 LGSVELPVNDDLVPAVVGNHLVNGD----PRRILARFGAVPDVHHYIRVSVLNA 342
LG +E N ++ +VGN + GD P RI F V +++ S L+A
Sbjct: 102 LGEIESYANRRVLKILVGNKVDKGDEREVPERIGRDFSDVNQFDYFLETSALDA 155
>AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown protein
protein.
Length = 318
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 246 QPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 338
QPS W S D G + S P +G+RS+
Sbjct: 39 QPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 69
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 265 DPRRILARFGAVPDVHHYIRVSVLNAD 345
DPRR ARF A+ D HH I S +NAD
Sbjct: 651 DPRR--ARF-ALTDFHHCIESSRVNAD 674
>Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical
protein T05A10.3 protein.
Length = 406
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 21 EDRRLENVYQAVRSVRAEEEKHLIRLRRQITSASHRR 131
E+RRLE+ +A + EEE L RR+ H+R
Sbjct: 293 EERRLESERRAEEERKREEEAKLQEQRRREQEDEHKR 329
>Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical
protein M01F1.9 protein.
Length = 366
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -1
Query: 266 SPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGP---QEYRFD---GRGYATMAGRGYL 105
+P +R PTT+ TKS+ T S+ P Q GP +++ D R RG+L
Sbjct: 62 TPSSRPRPTTSVTKSAATVYSSHPNILFCELQLGPGQTKQFVCDIPLSRNGIPPTFRGHL 121
Query: 104 TPQSNQV 84
SN++
Sbjct: 122 VKYSNRI 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,130,838
Number of Sequences: 27780
Number of extensions: 255925
Number of successful extensions: 753
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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