Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2034
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil...    30   0.93 
At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing ...    28   3.8  
At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family prote...    27   5.0  
At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identic...    27   5.0  
At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing ...    27   8.7  
At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putativ...    27   8.7  
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /...    27   8.7  
At2g19170.1 68415.m02237 subtilase family protein contains simil...    27   8.7  

>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 643

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +2

Query: 176 RRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSWPGSELSPMSITTYGY 328
           RR + PWVL  ++ ++ W+  ++  ++++    G   G   S +++T   +
Sbjct: 473 RRFLIPWVLGGFIMSIVWFYMIANELVALLVTFGEIYGINPSILALTVLAW 523


>At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing
           protein similar to ascorbate oxidase promoter-binding
           protein GB:D45066 GI:853689 from [Cucurbita maxima]
          Length = 175

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 231 TSGCRQPSCQWRPSPDPGQVRSCPRCPSLHT 323
           T+  R PS        P ++  CPRC S+ T
Sbjct: 42  TTAVRSPSSDLTAEKRPDKIIPCPRCKSMET 72


>At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 317

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 305 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEP 195
           +G  P    I  G+ +  W+P     K+S TG  T+P
Sbjct: 19  AGVVPYTLEIEPGTKINFWVPKETLKKNSGTGKPTKP 55


>At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identical
           to beta-expansin [Arabidopsis thaliana]
           gi|2224913|gb|AAB61709; similar to SP:O04701 major
           pollen allergen, Bermuda grass [Cynodon dactylon];
           beta-expansin gene family, PMID:11641069
          Length = 271

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 305 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNST 201
           SG+ P L    +    TRWLP TA    S  G+ +
Sbjct: 22  SGSTPPLTHSNQQVAATRWLPATATWYGSAEGDGS 56


>At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing
           protein identical to dof6 zinc finger protein GI:5689615
           from [Arabidopsis thaliana]
          Length = 245

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 243 RQPSCQWRPSPDPGQVRSCPRCPSLHT 323
           ++P    RP+P P Q   CPRC S +T
Sbjct: 25  KKPLSATRPAP-PEQSLRCPRCDSTNT 50


>At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putative /
           UPD, putative similar to uroporphyrinogen decarboxylase
           (chloroplast) from Nicotiana tabacum [SP|Q42967],
           Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220];
           contains Pfam domain uroporphyrinogen decarboxylase
           (URO-D) PF01208
          Length = 394

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 57  RSVRAEEEKHLIRLRRQITSASHRRISTAIEPVLLRA 167
           +S+ + +   ++R   + T+ + R++S   EP+LLRA
Sbjct: 23  KSLSSTKSCRIVRCSVEGTTVTERKVSATSEPLLLRA 59


>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 783

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 249 PSCQWRPSP--DPGQVRSCPRCPSLHTGIRS 335
           P+  +R SP  +PG++R       LHTG R+
Sbjct: 71  PTASFRLSPPHEPGRIRGSGSSEQLHTGFRA 101


>At2g19170.1 68415.m02237 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 815

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 415 RTHNTSNTIXNISHYRFLG--RLHGDR-HSERIPVCSDGHR 302
           RT + + T+ ++S     G  +L G R H  RIPV + GHR
Sbjct: 774 RTFSVTMTVRSVSGVYSFGEVKLKGSRGHKVRIPVVALGHR 814


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,601,203
Number of Sequences: 28952
Number of extensions: 236946
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)