Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2031
         (550 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0N2R6 Cluster: Signal recognition particle receptor be...    94   2e-18
UniRef50_UPI00015B56C7 Cluster: PREDICTED: similar to signal rec...    62   8e-09
UniRef50_UPI0000E47BA2 Cluster: PREDICTED: hypothetical protein;...    57   2e-07
UniRef50_A7REZ8 Cluster: Predicted protein; n=1; Nematostella ve...    51   2e-05
UniRef50_Q9Y5M8 Cluster: Signal recognition particle receptor su...    50   5e-05
UniRef50_Q6IDG2 Cluster: RE55992p; n=4; Sophophora|Rep: RE55992p...    48   1e-04
UniRef50_UPI00015BCDE6 Cluster: UPI00015BCDE6 related cluster; n...    33   3.3  
UniRef50_Q5HNV9 Cluster: Competence protein ComEC/Rec2, putative...    33   5.8  
UniRef50_Q54XX1 Cluster: Signal recognition particle receptor be...    32   7.6  

>UniRef50_Q0N2R6 Cluster: Signal recognition particle receptor beta
           subunit; n=2; Endopterygota|Rep: Signal recognition
           particle receptor beta subunit - Bombyx mori (Silk moth)
          Length = 280

 Score = 93.9 bits (223), Expect = 2e-18
 Identities = 41/46 (89%), Positives = 43/46 (93%)
 Frame = +1

Query: 1   SFLGKEGKDFEFSHIRNKVEFAECSANTNDDENPTDIKPLQDWISK 138
           SFLGKEGKDFEFSHIRNKVEFAECSANTNDDE   DIKPLQ+WIS+
Sbjct: 204 SFLGKEGKDFEFSHIRNKVEFAECSANTNDDEKSADIKPLQEWISE 249



 Score = 45.6 bits (103), Expect = 8e-04
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +3

Query: 135 EAVD*NYHYYFFALPTILSICFSHS 209
           EA+D NYHYYFFALPTILSI F+HS
Sbjct: 249 EALDWNYHYYFFALPTILSI-FTHS 272


>UniRef50_UPI00015B56C7 Cluster: PREDICTED: similar to signal
           recognition particle receptor beta subunit; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to signal
           recognition particle receptor beta subunit - Nasonia
           vitripennis
          Length = 286

 Score = 62.1 bits (144), Expect = 8e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   FLGKEGKDFEFSHIRNKVEFAECSANTNDDENPTDIKPLQDWISKL 141
           +LGK GKDFEFSH+  KV+FAE SA   D E P DI+ L  W++KL
Sbjct: 240 YLGKTGKDFEFSHLDKKVDFAESSAFIKDAETPADIEQLTSWLTKL 285


>UniRef50_UPI0000E47BA2 Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 262

 Score = 57.2 bits (132), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 34/47 (72%)
 Frame = +1

Query: 1   SFLGKEGKDFEFSHIRNKVEFAECSANTNDDENPTDIKPLQDWISKL 141
           +FLGK+GKDF+FSH+ N V+F ECSA  +  ++  ++  + +WIS L
Sbjct: 215 TFLGKQGKDFDFSHLANPVDFVECSAKGSSADDEGELNTVTEWISNL 261


>UniRef50_A7REZ8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 265

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   SFLGKEGKDFEFSHIRN-KVEFAECSANTNDDENPTDIKPLQDWISK 138
           + +GK+GKDFEF+ +   KVEF ECSA  N D     I  L DWI K
Sbjct: 217 ALVGKKGKDFEFADVEPVKVEFVECSAKGNADNKNPQIDALHDWIEK 263


>UniRef50_Q9Y5M8 Cluster: Signal recognition particle receptor
           subunit beta; n=115; Euteleostomi|Rep: Signal
           recognition particle receptor subunit beta - Homo
           sapiens (Human)
          Length = 271

 Score = 49.6 bits (113), Expect = 5e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +1

Query: 7   LGKEGKDFEFSHIRNKVEFAECSA-NTNDDENPTDIKPLQDWISKL 141
           LGK+GK+FEFS +  KVEF ECSA     D    DI+ L+ W++K+
Sbjct: 225 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLEKWLAKI 270


>UniRef50_Q6IDG2 Cluster: RE55992p; n=4; Sophophora|Rep: RE55992p -
           Drosophila melanogaster (Fruit fly)
          Length = 268

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +1

Query: 7   LGKEGKDFEFSHIRNKVEFAECSANTNDDENPTDIKPLQDWISKL 141
           LGK G+DFEFSHI   ++FAE SA        T++ PL DW+++L
Sbjct: 229 LGKPGRDFEFSHIAQNIQFAEASA------KDTELDPLTDWLARL 267


>UniRef50_UPI00015BCDE6 Cluster: UPI00015BCDE6 related cluster; n=1;
           unknown|Rep: UPI00015BCDE6 UniRef100 entry - unknown
          Length = 633

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 374 KILYEGVFLRIISNETYR*ILRLYTHNSFFFKPVDRAXNYTKCHKVKISKLHI 532
           K LY   F   IS    + +L  ++ N F++KP+D    +  CH V   K+ I
Sbjct: 350 KWLYLEDFDIAISENCIKRMLNAFSENLFYYKPIDYFFEHVDCHYVHPEKIDI 402


>UniRef50_Q5HNV9 Cluster: Competence protein ComEC/Rec2, putative;
           n=2; Staphylococcus epidermidis|Rep: Competence protein
           ComEC/Rec2, putative - Staphylococcus epidermidis
           (strain ATCC 35984 / RP62A)
          Length = 738

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166 FLHYLLYSAFVLATVHYCVVLLF*KCLIKT-YSENNLLFMFI*DNVAVKPKSAMCKNSIL 342
           FL+ L+Y  FV + + + +VL+    LI+  Y+E  L  +   D++  K KS   K+ ++
Sbjct: 434 FLYILVYRGFVTSVLSFLIVLIIFTHLIRPHYAELTLFDVGQGDSILFKTKSN--KSVLI 491

Query: 343 D*GVKKN 363
           D G K+N
Sbjct: 492 DTGGKRN 498


>UniRef50_Q54XX1 Cluster: Signal recognition particle receptor beta
           subunit; n=1; Dictyostelium discoideum AX4|Rep: Signal
           recognition particle receptor beta subunit -
           Dictyostelium discoideum AX4
          Length = 290

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 4   FLGKEGKDFEFSHIRNKVEFAECSANTNDDE 96
           +LG EG  F+F H+ N V+F+  SA+ ++ E
Sbjct: 244 YLGIEGTPFQFDHLPNDVQFSNGSASPSNGE 274


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,000,391
Number of Sequences: 1657284
Number of extensions: 9143591
Number of successful extensions: 19853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19848
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)