Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2031
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    29   0.45 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   3.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   3.2  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   5.6  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   7.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    25   9.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.7  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.7  

>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -2

Query: 447 VYSLNIYL*VSFDIILKNTPSYKILYENVFFYSLIQN 337
           V SLNIY+ + + I+     ++ IL+ +V+ +++I+N
Sbjct: 320 VLSLNIYIGLIYSILYLWFEAFPILFTSVYHFTIIEN 356


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 396  NTPSYKILYENVFFYSLIQNRVF 328
            N PS+  LY N  F++ IQ +VF
Sbjct: 1351 NNPSFISLYPNFKFFNKIQTQVF 1373


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 134  EIQS-CRGLMSVGFSSSFVLAEHSANSTLFLM*ENSKSLPSLP 9
            EI+S CR LM+VG +       H+A     L  E    +P+LP
Sbjct: 1186 EIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLP 1228


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 117 SAGLDFEAVD*NYHYYFFALPTILSICFSHSTLLCRF 227
           S GL   A++      F   PT LS CF+H  L+  F
Sbjct: 152 SLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAF 188


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 447 VYSLNIYL*VSFDIILKNTPSYKILYENVFFYSLIQN 337
           V SL IY+ + + I+     ++ IL+  V+ ++ I+N
Sbjct: 320 VLSLTIYIGLVYSILYLWFEAFPILFTTVYHFTTIEN 356


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 293 SQINIKSKLFSEYVLIKHF*NNKTTQ*CTVAKTNAEYS 180
           S +++ S++FS + L + + N  T++ C V    A  S
Sbjct: 185 SVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMS 222


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 542 QNLLCAILRFLLYDISYSSQPYLPV*KKNCYAYIALIFIY 423
           QN+L + +R L  +I Y  Q ++P  K +   +  L+ +Y
Sbjct: 323 QNILSSFVRKLQLEICYVLQKFMPNVKDSTSKFSLLLQLY 362


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 241  IFKIIKRHNSVLWLKQMLSIVGSA 170
            +F+++K H S   L Q+  IVGSA
Sbjct: 2735 LFELVKNHYSQELLSQVHKIVGSA 2758


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +1

Query: 31  EFSHIR--NKVEFAECSANTNDD----ENPTDIKPLQD 126
           E +H R  N ++ +  SAN NDD    +NP++ K + D
Sbjct: 67  ELAHARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMSD 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,356
Number of Sequences: 5004
Number of extensions: 44011
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)