BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-2031 (550 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 29 0.45 SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 3.2 SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 3.2 SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 25 5.6 SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 7.3 SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.7 SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 25 9.7 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.7 SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.7 >SPBC609.04 |caf5||spermine family transmembrane transporter Caf5|Schizosaccharomyces pombe|chr 2|||Manual Length = 531 Score = 29.1 bits (62), Expect = 0.45 Identities = 12/37 (32%), Positives = 25/37 (67%) Frame = -2 Query: 447 VYSLNIYL*VSFDIILKNTPSYKILYENVFFYSLIQN 337 V SLNIY+ + + I+ ++ IL+ +V+ +++I+N Sbjct: 320 VLSLNIYIGLIYSILYLWFEAFPILFTSVYHFTIIEN 356 >SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2176 Score = 26.2 bits (55), Expect = 3.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 396 NTPSYKILYENVFFYSLIQNRVF 328 N PS+ LY N F++ IQ +VF Sbjct: 1351 NNPSFISLYPNFKFFNKIQTQVF 1373 >SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizosaccharomyces pombe|chr 1|||Manual Length = 1403 Score = 26.2 bits (55), Expect = 3.2 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -3 Query: 134 EIQS-CRGLMSVGFSSSFVLAEHSANSTLFLM*ENSKSLPSLP 9 EI+S CR LM+VG + H+A L E +P+LP Sbjct: 1186 EIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLP 1228 >SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 276 Score = 25.4 bits (53), Expect = 5.6 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +3 Query: 117 SAGLDFEAVD*NYHYYFFALPTILSICFSHSTLLCRF 227 S GL A++ F PT LS CF+H L+ F Sbjct: 152 SLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAF 188 >SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter Mfs1|Schizosaccharomyces pombe|chr 1|||Manual Length = 531 Score = 25.0 bits (52), Expect = 7.3 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -2 Query: 447 VYSLNIYL*VSFDIILKNTPSYKILYENVFFYSLIQN 337 V SL IY+ + + I+ ++ IL+ V+ ++ I+N Sbjct: 320 VLSLTIYIGLVYSILYLWFEAFPILFTTVYHFTTIEN 356 >SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 24.6 bits (51), Expect = 9.7 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = -3 Query: 293 SQINIKSKLFSEYVLIKHF*NNKTTQ*CTVAKTNAEYS 180 S +++ S++FS + L + + N T++ C V A S Sbjct: 185 SVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMS 222 >SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 400 Score = 24.6 bits (51), Expect = 9.7 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -3 Query: 542 QNLLCAILRFLLYDISYSSQPYLPV*KKNCYAYIALIFIY 423 QN+L + +R L +I Y Q ++P K + + L+ +Y Sbjct: 323 QNILSSFVRKLQLEICYVLQKFMPNVKDSTSKFSLLLQLY 362 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 24.6 bits (51), Expect = 9.7 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -1 Query: 241 IFKIIKRHNSVLWLKQMLSIVGSA 170 +F+++K H S L Q+ IVGSA Sbjct: 2735 LFELVKNHYSQELLSQVHKIVGSA 2758 >SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 132 Score = 24.6 bits (51), Expect = 9.7 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Frame = +1 Query: 31 EFSHIR--NKVEFAECSANTNDD----ENPTDIKPLQD 126 E +H R N ++ + SAN NDD +NP++ K + D Sbjct: 67 ELAHARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMSD 104 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,176,356 Number of Sequences: 5004 Number of extensions: 44011 Number of successful extensions: 110 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 110 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 227943826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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