Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2031
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   5e-07
SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)                29   2.5  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              28   4.4  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   27   7.6  
SB_56480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   SFLGKEGKDFEFSHIRN-KVEFAECSANTNDDENPTDIKPLQDWISK 138
           + +GK+GKDFEF+ +   KVEF ECSA  N D     I  L DWI K
Sbjct: 37  ALVGKKGKDFEFADVEPVKVEFVECSAKGNADNKNPQIDALHDWIEK 83


>SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)
          Length = 401

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 512 LLYDISYSSQPYLPV*KKNCYAYIALIFIYR 420
           L+++I  S + Y+P+  +NC    +LIF+YR
Sbjct: 323 LVFEILQSWKYYIPLINRNCPYPFSLIFVYR 353


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 471  GLKKKLLCVYSLNIYL*VSFDIILKNTPSYKILYENVFFYSLIQN 337
            GL    L +Y L +     +D+ILK    Y ++   +  YSLI N
Sbjct: 2068 GLILNALALYDLILNALAIYDLILKTLALYSLILNALALYSLILN 2112


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 77  PTRMTMKIRLTSSLCRIGFRSCRL 148
           PT+ T + RL  SL +IG+ SC L
Sbjct: 876 PTKWTTQTRLDVSLVQIGYNSCCL 899


>SB_56480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 7  LGKEGKDFEFSHIRNKVEFAECSA 78
          +GK   DF+ +H++ K+ FA+C A
Sbjct: 25 IGKRTNDFK-THLQRKIRFAQCKA 47


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 108  HQASAGLDFEAVD*NYHYYFFALPTILSICFSHSTLLCRF 227
            H+AS G+  +AV  +   Y F + T++ I  S S ++CRF
Sbjct: 943  HRAS-GMPRKAVQRSNTGYLFVIVTVIFIISSLSIVICRF 981


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,204
Number of Sequences: 59808
Number of extensions: 288132
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)