Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2031
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-11|CAB03969.2|  365|Caenorhabditis elegans Hypothetical p...    28   3.9  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    27   6.7  

>Z81484-11|CAB03969.2|  365|Caenorhabditis elegans Hypothetical
           protein C47A10.4 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 99  SD*HQASAGLDFEAVD*NYHYYFFALPTILSI 194
           SD  Q+ +GL F A    YHY FF + T+L I
Sbjct: 107 SDGLQSRSGLLFWAALLRYHYMFFGVHTLLCI 138


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 59  NSQSVRPTRMTMKIRLTSSLCRIGFRSCRLKLSLLFFCTTYY 184
           N  ++ PTR   +      +CR   R C L L +++    +Y
Sbjct: 447 NENAISPTRYFFENIFAPFICRPSVRFCMLNLYVVYIAIAFY 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,751
Number of Sequences: 27780
Number of extensions: 238132
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)