Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2031
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.67 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 72  TLCEFDFISNVREFEIF--TLFT 10
           T C FD++++  E  IF  T+FT
Sbjct: 195 TSCSFDYLTDTNEIRIFVATIFT 217


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 150 NYHYYFFALPTILSICFSHSTL 215
           NYH++F  + T++ + F  + +
Sbjct: 4   NYHFFFILVITLIFLYFGEADI 25


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 72  TLCEFDFISNVREFEIF 22
           T C FDF+++  + ++F
Sbjct: 204 TTCSFDFLTDDEDTKVF 220


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 542 QNLLCAILRFLLYDISYSSQPYLPV 468
           + L C   R L Y+I+Y  Q  +PV
Sbjct: 97  KKLYCNNYRKLYYNINYIEQIPIPV 121


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 72  TLCEFDFISNVREFEIF 22
           T C FDF+++  + ++F
Sbjct: 204 TTCSFDFLTDDEDTKVF 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,174
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)