Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2029
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    46   2e-05
02_04_0592 - 24171698-24172285                                         37   0.016

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
 Frame = +2

Query: 110 LKPVNNFQL*QLYQGIWYEISKFPNESE-KNGKCSSAEYKLXGD-VVKVKTVHIIDGVKK 283
           +K V N  L + Y G WYEI+ FP+  + ++G  + A Y L GD  VKV      DG + 
Sbjct: 1   MKVVRNLDL-ERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRG 59

Query: 284 YIEGTA----KLTDDAH*SRKAY-SXFLSLEKYPPDGSXQVLATD 403
           +IEGTA     ++D+A    K Y   FL +  +P  G   VL  D
Sbjct: 60  HIEGTAYRADPVSDEAKLKVKFYVPPFLPI--FPVVGDYWVLHVD 102


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +2

Query: 146 YQGIWYEISKFPNESE-KNGKCSSAEYKLXGDVVKVKTVH---IIDGVKKYIEGTAKLTD 313
           Y G WYEI+  PN  + ++G+ + A Y L  D   V  ++      G + YI+GTA   D
Sbjct: 25  YMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGKRDYIKGTAYKAD 84

Query: 314 DA 319
            A
Sbjct: 85  PA 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,978
Number of Sequences: 37544
Number of extensions: 240800
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)