Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2029
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 42 0.001
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 42 0.001
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 42 0.001
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 42 0.001
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 42 0.001
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 42 0.001
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 42 0.001
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 42.3 bits (95), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +2
Query: 92 KAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSAEYKL-XGDVVKVKTVHI- 265
K P P ++ NF + Y G WYEI K P E NG+C A Y L +KV +
Sbjct: 27 KCPNPPVQ--ENFDV-NKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELR 82
Query: 266 IDGVKKYIEGTA---KLTDDAH*SRKAYSXFLSLEKYPPDGSXQVLATDF 406
DG IEG A LT+ A K +S F+ P +LATD+
Sbjct: 83 ADGTVNQIEGEATPVNLTEPAKLEVK-FSWFM------PSAPYWILATDY 125
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 42.3 bits (95), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +2
Query: 92 KAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSAEYKL-XGDVVKVKTVHI- 265
K P P ++ NF + Y G WYEI K P E NG+C A Y L +KV +
Sbjct: 27 KCPNPPVQ--ENFDV-NKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELR 82
Query: 266 IDGVKKYIEGTA---KLTDDAH*SRKAYSXFLSLEKYPPDGSXQVLATDF 406
DG IEG A LT+ A K +S F+ P +LATD+
Sbjct: 83 ADGTVNQIEGEATPVNLTEPAKLEVK-FSWFM------PSAPYWILATDY 125
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 42.3 bits (95), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +2
Query: 92 KAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSAEYKL-XGDVVKVKTVHI- 265
K P P ++ NF + Y G WYEI K P E NG+C A Y L +KV +
Sbjct: 27 KCPNPPVQ--ENFDV-NKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELR 82
Query: 266 IDGVKKYIEGTA---KLTDDAH*SRKAYSXFLSLEKYPPDGSXQVLATDF 406
DG IEG A LT+ A K +S F+ P +LATD+
Sbjct: 83 ADGTVNQIEGEATPVNLTEPAKLEVK-FSWFM------PSAPYWILATDY 125
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 42.3 bits (95), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +2
Query: 92 KAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSAEYKL-XGDVVKVKTVHI- 265
K P P ++ NF + Y G WYEI K P E NG+C A Y L +KV +
Sbjct: 27 KCPNPPVQ--ENFDV-NKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELR 82
Query: 266 IDGVKKYIEGTA---KLTDDAH*SRKAYSXFLSLEKYPPDGSXQVLATDF 406
DG IEG A LT+ A K +S F+ P +LATD+
Sbjct: 83 ADGTVNQIEGEATPVNLTEPAKLEVK-FSWFM------PSAPYWILATDY 125
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 42.3 bits (95), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +2
Query: 92 KAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSAEYKL-XGDVVKVKTVHI- 265
K P P ++ NF + Y G WYEI K P E NG+C A Y L +KV +
Sbjct: 27 KCPNPPVQ--ENFDV-NKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELR 82
Query: 266 IDGVKKYIEGTA---KLTDDAH*SRKAYSXFLSLEKYPPDGSXQVLATDF 406
DG IEG A LT+ A K +S F+ P +LATD+
Sbjct: 83 ADGTVNQIEGEATPVNLTEPAKLEVK-FSWFM------PSAPYWILATDY 125
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 42.3 bits (95), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +2
Query: 92 KAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSAEYKL-XGDVVKVKTVHI- 265
K P P ++ NF + Y G WYEI K P E NG+C A Y L +KV +
Sbjct: 27 KCPNPPVQ--ENFDV-NKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELR 82
Query: 266 IDGVKKYIEGTA---KLTDDAH*SRKAYSXFLSLEKYPPDGSXQVLATDF 406
DG IEG A LT+ A K +S F+ P +LATD+
Sbjct: 83 ADGTVNQIEGEATPVNLTEPAKLEVK-FSWFM------PSAPYWILATDY 125
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 42.3 bits (95), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +2
Query: 92 KAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSAEYKL-XGDVVKVKTVHI- 265
K P P ++ NF + Y G WYEI K P E NG+C A Y L +KV +
Sbjct: 27 KCPNPPVQ--ENFDV-NKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELR 82
Query: 266 IDGVKKYIEGTA---KLTDDAH*SRKAYSXFLSLEKYPPDGSXQVLATDF 406
DG IEG A LT+ A K +S F+ P +LATD+
Sbjct: 83 ADGTVNQIEGEATPVNLTEPAKLEVK-FSWFM------PSAPYWILATDY 125
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,215,265
Number of Sequences: 237096
Number of extensions: 1400310
Number of successful extensions: 1999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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