Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2029
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical ...    27   8.7  
AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical...    27   8.7  
AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8 prot...    27   8.7  

>Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical
           protein C35A5.4 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 89  TKAPAPSLKPVNNFQL*QLYQGIWYEISKFPNESEKNGKCSSA 217
           TK P P+ KPV N +     + +   +S  P   +KN +  SA
Sbjct: 328 TKTPTPTKKPVENNETLSQVKTVSKALSHSPKSPKKNSQEKSA 370


>U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical
           protein ZC449.1 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 170 SKFPNESEKNGKCSSAEYKLXGDVVKVKT 256
           S+  + S  NG  S  +YK+ G+ V+V+T
Sbjct: 415 SESESSSPSNGGWSECDYKINGETVRVRT 443


>AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 321 WASSVSLAVPSIYFLTPSMICTVLTFTTSPXSLYSAEEHLPFFSDSLGNF 172
           W SS    + S   L PSMICT ++ TT+P + + A    P  S    NF
Sbjct: 388 WRSSNKSLLES---LRPSMICTSVS-TTAPSTNFHAPLQYPGTSSPSSNF 433


>AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 321 WASSVSLAVPSIYFLTPSMICTVLTFTTSPXSLYSAEEHLPFFSDSLGNF 172
           W SS    + S   L PSMICT ++ TT+P + + A    P  S    NF
Sbjct: 388 WRSSNKSLLES---LRPSMICTSVS-TTAPSTNFHAPLQYPGTSSPSSNF 433


>AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8
           protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 321 WASSVSLAVPSIYFLTPSMICTVLTFTTSPXSLYSAEEHLPFFSDSLGNF 172
           W SS    + S   L PSMICT ++ TT+P + + A    P  S    NF
Sbjct: 388 WRSSNKSLLES---LRPSMICTSVS-TTAPSTNFHAPLQYPGTSSPSSNF 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,327,586
Number of Sequences: 27780
Number of extensions: 201063
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)