Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2029
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    38   0.008
At5g10760.1 68418.m01250 aspartyl protease family protein contai...    27   8.2  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 146 YQGIWYEISKFPNESE-KNGKCSSAEYKLXGD-VVKVKTVHIIDGVKKYIEGTAKLTD 313
           Y G WYEI+ FP+  + KNG  + A Y L  D  + V      +G + +IEG+A   D
Sbjct: 18  YMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRGFIEGSAYKAD 75


>At5g10760.1 68418.m01250 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 464

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 207 ALQLNTNXTVTW*RSRPCISSTASRSI*KGXPSSPTT 317
           +L  +T   +TW +  PC+ S  S+   K  PSS +T
Sbjct: 146 SLVFDTGSDLTWTQCEPCLGSCYSQKEPKFNPSSSST 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,847,820
Number of Sequences: 28952
Number of extensions: 190466
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)